Detailed information NTG0054580

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPAKL86_RS00080
• Genome accession: NC_019563
• Coordinates: 9893..10858 (-)
• Length: 321 a.a.
• NCBI ID: WP_015086517.1
• Uniprot ID: K7YZ78
• Organism: Helicobacter pylori Aklavik86
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4893..15858

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPAKL86_RS07635	-	4893..5036 (-)	144	WP_158511376.1	hypothetical protein	-
HPAKL86_RS00060 (HPAKL86_00035)	-	5188..6120 (-)	933	WP_015086513.1	GDP-L-fucose synthase family protein	-
HPAKL86_RS00065 (HPAKL86_00040)	gmd	6113..7258 (-)	1146	WP_015086514.1	GDP-mannose 4,6-dehydratase	-
HPAKL86_RS00070 (HPAKL86_00045)	-	7286..8698 (-)	1413	WP_015086515.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPAKL86_RS00075 (HPAKL86_00050)	comB10	8764..9900 (-)	1137	WP_015086516.1	DNA type IV secretion system protein ComB10	Machinery gene
HPAKL86_RS00080 (HPAKL86_00055)	comB9	9893..10858 (-)	966	WP_015086517.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPAKL86_RS00085 (HPAKL86_00060)	comB8	10858..11601 (-)	744	WP_015086518.1	type IV secretion system protein	Machinery gene
HPAKL86_RS00090 (HPAKL86_00065)	comB7	11598..11723 (-)	126	WP_015086519.1	hypothetical protein	Machinery gene
HPAKL86_RS00095 (HPAKL86_00070)	comB6	11749..12804 (-)	1056	WP_015086520.1	P-type conjugative transfer protein TrbL	Machinery gene
HPAKL86_RS00100 (HPAKL86_00075)	-	12812..13807 (-)	996	WP_015086521.1	PDZ domain-containing protein	-
HPAKL86_RS00105 (HPAKL86_00080)	-	13807..14100 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HPAKL86_RS00110 (HPAKL86_00085)	panD	14111..14461 (-)	351	WP_015086522.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 37142.74 Da
• Isoelectric Point: 9.5583

>NTDB_id=54580 HPAKL86_RS00080 WP_015086517.1 9893..10858(-) (comB9) [Helicobacter pylori Aklavik86]
MRKVLYAFVGFLLVFNALRADDSLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLLFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNKGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENTTNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLWICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=54580 HPAKL86_RS00080 WP_015086517.1 9893..10858(-) (comB9) [Helicobacter pylori Aklavik86]
ATGCGTAAGGTTTTATACGCTTTTGTGGGCTTTTTGTTGGTTTTTAACGCTTTAAGAGCCGATGATTCTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTACTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATAAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCACAAAATAAAGAAAATACCCTTGAAAATACCACAAACAACAAACCCTTAAAAGA
AGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACGATTGGCGATAACACGAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGTGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

3D structure

• AlphaFold DB: K7YZ78

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.331	100	0.938