Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JYB84_RS16780 Genome accession   NZ_CP071501
Coordinates   3789488..3791008 (+) Length   506 a.a.
NCBI ID   WP_207321151.1    Uniprot ID   -
Organism   Shewanella cyperi strain FJAT-53720     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3784488..3796008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB84_RS16760 (JYB84_16760) - 3785255..3785644 (-) 390 WP_207321147.1 YkgJ family cysteine cluster protein -
  JYB84_RS16765 (JYB84_16765) - 3785771..3786613 (+) 843 WP_207321148.1 GGDEF domain-containing protein -
  JYB84_RS16770 (JYB84_16770) - 3786610..3788403 (-) 1794 WP_207321149.1 diguanylate cyclase domain-containing protein -
  JYB84_RS16775 (JYB84_16775) - 3788400..3789398 (-) 999 WP_207321150.1 ABC transporter substrate-binding protein -
  JYB84_RS16780 (JYB84_16780) comM 3789488..3791008 (+) 1521 WP_207321151.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JYB84_RS16785 (JYB84_16785) - 3791179..3793872 (+) 2694 WP_228290820.1 cytochrome c peroxidase -
  JYB84_RS16790 (JYB84_16790) - 3793886..3794413 (+) 528 WP_207321152.1 O-acetyl-ADP-ribose deacetylase -
  JYB84_RS16795 (JYB84_16795) - 3794624..3795727 (+) 1104 WP_207321153.1 hypothetical protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54618.97 Da        Isoelectric Point: 8.4048

>NTDB_id=545708 JYB84_RS16780 WP_207321151.1 3789488..3791008(+) (comM) [Shewanella cyperi strain FJAT-53720]
MGIACVATRASLGVEAPAVMVEVHLGNGLPAFNLVGLPEASVKEARERVRSALVNAGFEFPMRRITVNLAPADLPKQGGR
YDLPIALGILAASGQIPLNSLKDREFVGELALTGEIRPCQGLLPVIIAARQAGRSLILPQDNRLDAELVGYPHIHLCCQL
PQLTAFLHGQQQLPGLSVGTEWLDEAPPHPGPCLSEVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRIMSLLPP
LNYEEALEVAALHSVAGMSIAPQKFQQRPFRAPHHTSSAVSLVGGGSIPRPGEISLAHRGVLFLDELPEFPRRVLDCLRE
PMETGEVVISRAAAKLTFASRFQLIAAMNPSPCGSSDADSRASIEQINRYLARLSGPFLDRFDLSIEVPRLPPGTLSNQT
MTGATSAELAQRVRRARETQLARAGVLNSDLSGKQLQQAGFTAADLQFLEQSVNRLGLSVRSFHRLQRVARTIADLDQSI
QVERRHLAQALGYRAMDRLLAGLRQH

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=545708 JYB84_RS16780 WP_207321151.1 3789488..3791008(+) (comM) [Shewanella cyperi strain FJAT-53720]
ATGGGGATCGCCTGTGTTGCTACCCGGGCCAGTTTGGGCGTCGAGGCGCCGGCCGTGATGGTGGAGGTGCATTTGGGCAA
TGGCTTGCCCGCATTCAATCTGGTGGGCCTGCCTGAGGCCTCGGTCAAGGAAGCCCGCGAACGGGTGCGCAGCGCCCTGG
TCAATGCCGGCTTCGAGTTCCCGATGCGCCGCATCACTGTCAATCTGGCGCCGGCAGACTTGCCCAAGCAAGGTGGCCGC
TACGATCTGCCCATAGCCCTTGGCATACTCGCCGCCTCGGGCCAGATCCCGCTCAACAGCCTCAAGGACCGGGAGTTTGT
CGGCGAGCTGGCCCTCACAGGTGAAATCCGTCCCTGCCAGGGGCTGTTGCCTGTGATCATCGCCGCCCGCCAGGCGGGTC
GCAGCCTGATATTGCCCCAGGATAACCGCCTCGATGCCGAGCTGGTGGGCTATCCCCATATTCACCTGTGTTGCCAATTG
CCACAGCTGACGGCCTTTCTCCATGGCCAGCAGCAGCTGCCGGGACTGAGTGTCGGCACCGAATGGCTGGATGAGGCGCC
GCCACACCCGGGCCCGTGTCTCAGCGAAGTCATAGGCCAGTATCAGGCCAAACAGGCGCTGGAAATTGCCGCCGCTGGCA
ATCACAATTTATTGATGCTGGGTCCCCCGGGTACGGGCAAGACCATGTTGGCCAGCAGGATCATGTCGCTGCTGCCACCA
CTTAACTACGAGGAAGCGCTGGAGGTGGCGGCCCTGCATTCGGTGGCGGGCATGAGCATAGCGCCGCAGAAATTCCAGCA
GCGGCCATTCCGAGCACCGCACCACACCAGTTCGGCCGTGTCCCTGGTGGGTGGCGGCAGTATTCCCAGACCCGGTGAAA
TATCCCTCGCCCACCGCGGTGTGTTGTTTCTCGACGAGTTGCCGGAATTTCCCCGCCGGGTACTGGATTGTCTGCGCGAA
CCCATGGAGACCGGCGAGGTGGTCATTTCCCGCGCCGCAGCCAAACTCACCTTTGCCAGCCGCTTTCAGCTCATCGCCGC
CATGAACCCCAGCCCCTGTGGCAGCAGCGATGCAGACAGCCGCGCCAGCATTGAGCAGATAAACCGTTATCTGGCGCGTC
TGTCGGGCCCCTTTCTCGACAGATTCGATCTGTCCATCGAGGTGCCGCGCCTGCCGCCGGGGACCTTGAGCAACCAGACA
ATGACCGGCGCCACTTCGGCCGAACTGGCCCAGCGGGTGCGCCGCGCCCGGGAGACCCAACTGGCCCGGGCCGGTGTGCT
CAACAGTGACCTGTCCGGCAAGCAGTTGCAGCAGGCGGGCTTTACGGCCGCGGATCTGCAATTCCTGGAGCAGAGCGTCA
ATCGCCTCGGGCTGTCGGTGCGCAGCTTTCACCGCCTGCAGCGGGTGGCGCGCACCATAGCCGACCTGGACCAGAGTATT
CAGGTGGAGCGCCGCCATCTGGCCCAGGCCCTGGGCTACCGCGCCATGGACCGATTGCTGGCGGGCTTGAGGCAACATTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.751

100

0.573
  comM Haemophilus influenzae Rd KW20

55.796

100

0.561
  comM Vibrio campbellii strain DS40M4

56.04

99.802

0.559
  comM Glaesserella parasuis strain SC1401

55.227

100

0.553
  comM Legionella pneumophila str. Paris

46.838

100

0.468
  comM Legionella pneumophila strain ERS1305867

46.838

100

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.863

98.221

0.431