Detailed information NTG0545707

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JYB84_RS16495
• Genome accession: NZ_CP071501
• Coordinates: 3714967..3715881 (+)
• Length: 304 a.a.
• NCBI ID: WP_207321100.1
• Uniprot ID: -
• Organism: Shewanella cyperi strain FJAT-53720
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3709967..3720881

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JYB84_RS16480 (JYB84_16480)	-	3711435..3711860 (+)	426	WP_207321097.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
JYB84_RS16485 (JYB84_16485)	pilB	3711920..3713629 (+)	1710	WP_207321098.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JYB84_RS16490 (JYB84_16490)	pilC	3713663..3714928 (+)	1266	WP_207321099.1	type II secretion system F family protein	Machinery gene
JYB84_RS16495 (JYB84_16495)	pilD	3714967..3715881 (+)	915	WP_207321100.1	A24 family peptidase	Machinery gene
JYB84_RS16500 (JYB84_16500)	coaE	3715890..3716495 (+)	606	WP_207321101.1	dephospho-CoA kinase	-
JYB84_RS16505 (JYB84_16505)	zapD	3716502..3717236 (+)	735	WP_207321102.1	cell division protein ZapD	-
JYB84_RS16510 (JYB84_16510)	yacG	3717283..3717492 (+)	210	WP_207321103.1	DNA gyrase inhibitor YacG	-
JYB84_RS16515 (JYB84_16515)	mutT	3717499..3717894 (+)	396	WP_207321104.1	8-oxo-dGTP diphosphatase MutT	-
JYB84_RS16520 (JYB84_16520)	-	3718091..3718828 (+)	738	WP_207321105.1	ABC transporter substrate-binding protein	-
JYB84_RS16525 (JYB84_16525)	ric	3719090..3719791 (+)	702	WP_207321106.1	iron-sulfur cluster repair di-iron protein	-
JYB84_RS16530 (JYB84_16530)	-	3719871..3720362 (+)	492	WP_207321107.1	helix-turn-helix domain-containing protein	-

Sequence

Protein

• Length: 304 a.a.
• Molecular weight: 33835.21 Da
• Isoelectric Point: 7.2748

>NTDB_id=545707 JYB84_RS16495 WP_207321100.1 3714967..3715881(+) (pilD) [Shewanella cyperi strain FJAT-53720]
MSQFVIALGQSPWLFISLAFIFAACIGSFLNVVIHRFPVMLKREWQQECNQYLSEYHPALVAKVGEAELQKPIDNYPSKY
NLIVPASRCPKCHSSIKAWHNLPILGWMLLKGKCANCQTPISARYPIVEALTGITVATLAWHFGPSWQFLLAALLTFGLI
AMAGIDLDEMLLPDQITLPWLWLGLLANLNNQFVGIEDALIGAMAGYLSLWSVYWLFKILTGKEGMGYGDFKLMALFGAW
LGWQMLPLIILLSSLVGALVGITMMLSKKLSRENPIPFGPYIAAAGWIALVWGQDIVDWYLAGL

Nucleotide

• Length: 915 bp

>NTDB_id=545707 JYB84_RS16495 WP_207321100.1 3714967..3715881(+) (pilD) [Shewanella cyperi strain FJAT-53720]
ATGAGCCAATTTGTCATCGCCTTGGGTCAATCCCCATGGCTGTTTATTAGCCTGGCATTTATATTCGCTGCCTGCATTGG
CAGCTTTCTCAATGTGGTCATTCACCGCTTCCCTGTGATGTTGAAAAGGGAATGGCAGCAGGAGTGCAATCAATATTTGA
GCGAGTATCATCCAGCCTTGGTCGCCAAAGTGGGCGAGGCTGAGCTGCAAAAGCCAATTGATAATTATCCGAGCAAATAT
AACCTGATTGTACCGGCCTCACGCTGTCCCAAATGTCACAGCAGCATTAAGGCTTGGCATAATTTGCCCATCCTTGGTTG
GATGCTGCTAAAAGGGAAGTGCGCCAACTGTCAGACTCCCATATCCGCCAGATATCCCATAGTCGAAGCCTTAACCGGCA
TTACAGTCGCAACACTGGCCTGGCATTTCGGCCCCAGCTGGCAGTTTTTATTGGCTGCGCTGTTAACTTTTGGCTTAATA
GCCATGGCCGGAATAGATTTAGACGAAATGTTGTTGCCGGACCAAATAACACTGCCATGGTTGTGGCTCGGTTTGCTGGC
GAATCTCAATAATCAATTTGTCGGGATTGAAGATGCCCTTATTGGCGCAATGGCAGGCTATCTGTCGCTCTGGTCCGTAT
ATTGGCTATTCAAAATACTCACGGGCAAGGAAGGCATGGGCTATGGCGATTTTAAGCTGATGGCCCTGTTCGGCGCTTGG
CTTGGCTGGCAAATGCTGCCGCTCATTATCTTGCTCTCATCTCTTGTTGGCGCCCTAGTGGGAATCACCATGATGCTGAG
TAAAAAACTCTCCCGTGAAAACCCCATTCCCTTCGGTCCCTATATTGCGGCAGCCGGCTGGATAGCCTTGGTTTGGGGAC
AAGACATAGTTGACTGGTACCTAGCCGGTCTGTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (154-262)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-143)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.171	96.382	0.484
pilD	Vibrio campbellii strain DS40M4	50	96.711	0.484
pilD	Acinetobacter nosocomialis M2	48.454	95.724	0.464
pilD	Acinetobacter baumannii D1279779	47.766	95.724	0.457
pilD	Neisseria gonorrhoeae MS11	42.414	95.395	0.405