Detailed information NTG0545706

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: JYB84_RS16490
• Genome accession: NZ_CP071501
• Coordinates: 3713663..3714928 (+)
• Length: 421 a.a.
• NCBI ID: WP_207321099.1
• Uniprot ID: -
• Organism: Shewanella cyperi strain FJAT-53720
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3708663..3719928

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JYB84_RS16470 (JYB84_16470)	ampD	3708891..3709445 (-)	555	WP_207321095.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
JYB84_RS16475 (JYB84_16475)	nadC	3709669..3710526 (+)	858	WP_207321096.1	carboxylating nicotinate-nucleotide diphosphorylase	-
JYB84_RS16480 (JYB84_16480)	-	3711435..3711860 (+)	426	WP_207321097.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
JYB84_RS16485 (JYB84_16485)	pilB	3711920..3713629 (+)	1710	WP_207321098.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JYB84_RS16490 (JYB84_16490)	pilC	3713663..3714928 (+)	1266	WP_207321099.1	type II secretion system F family protein	Machinery gene
JYB84_RS16495 (JYB84_16495)	pilD	3714967..3715881 (+)	915	WP_207321100.1	A24 family peptidase	Machinery gene
JYB84_RS16500 (JYB84_16500)	coaE	3715890..3716495 (+)	606	WP_207321101.1	dephospho-CoA kinase	-
JYB84_RS16505 (JYB84_16505)	zapD	3716502..3717236 (+)	735	WP_207321102.1	cell division protein ZapD	-
JYB84_RS16510 (JYB84_16510)	yacG	3717283..3717492 (+)	210	WP_207321103.1	DNA gyrase inhibitor YacG	-
JYB84_RS16515 (JYB84_16515)	mutT	3717499..3717894 (+)	396	WP_207321104.1	8-oxo-dGTP diphosphatase MutT	-
JYB84_RS16520 (JYB84_16520)	-	3718091..3718828 (+)	738	WP_207321105.1	ABC transporter substrate-binding protein	-
JYB84_RS16525 (JYB84_16525)	ric	3719090..3719791 (+)	702	WP_207321106.1	iron-sulfur cluster repair di-iron protein	-

Sequence

Protein

• Length: 421 a.a.
• Molecular weight: 45788.94 Da
• Isoelectric Point: 10.0495

>NTDB_id=545706 JYB84_RS16490 WP_207321099.1 3713663..3714928(+) (pilC) [Shewanella cyperi strain FJAT-53720]
MATATASSKSKAKKSTAPKAPKIYTFEWKGLNREGKKTSGELRAANVAEIRAQLKNQGITPKTVKKKSAPLFGGDKKINA
MDIAMITRQIATMLSAGVPLVTTIEILGRGHEKPRMRELLGGILADVQSGIPLSDSLRPHRVYFDDLYVDLVAAGEHSGS
LDAVFDRIATYREKAEALKSKIKKAMFYPAAVVVVAVAVTTLLLLFVVPQFEDIFASFGAELPAFTQMIIGISRFLQSSW
YIFLVAIVAGIWSFVRAHRNSQLFRDKVDEYVLKIPIVGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNAVY
RKALLKIRQEVMAGMQMNVAMRTVNLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
LVGGLIVGMYLPIFQMGNVVG

Nucleotide

• Length: 1266 bp

>NTDB_id=545706 JYB84_RS16490 WP_207321099.1 3713663..3714928(+) (pilC) [Shewanella cyperi strain FJAT-53720]
ATGGCCACAGCAACGGCAAGCAGCAAGTCCAAAGCCAAAAAATCCACAGCCCCCAAAGCGCCGAAAATCTATACCTTCGA
GTGGAAAGGCCTGAACCGCGAGGGTAAAAAGACCAGTGGTGAATTACGCGCCGCAAACGTTGCCGAAATTCGTGCCCAAT
TAAAAAATCAGGGTATTACCCCAAAGACAGTTAAAAAGAAATCCGCGCCACTATTTGGTGGCGATAAAAAAATCAATGCG
ATGGATATCGCCATGATTACCCGCCAGATTGCCACCATGCTATCGGCCGGGGTTCCCTTGGTCACCACCATAGAGATTCT
CGGCCGCGGCCACGAAAAACCCCGTATGCGAGAACTCTTGGGTGGCATACTTGCAGATGTGCAGTCCGGTATTCCTCTTT
CTGACTCCCTGCGGCCACACAGAGTTTACTTTGATGATTTGTATGTAGATCTGGTCGCTGCGGGCGAGCATTCAGGTTCA
CTCGATGCCGTATTTGATCGCATCGCTACCTATAGAGAAAAAGCCGAAGCGCTCAAGTCAAAAATTAAGAAGGCCATGTT
CTATCCCGCAGCTGTCGTTGTGGTTGCCGTGGCGGTGACCACATTATTGCTGTTGTTTGTTGTGCCCCAGTTTGAAGACA
TATTTGCCAGCTTCGGCGCCGAACTGCCGGCCTTTACCCAAATGATCATTGGGATTTCACGCTTCCTGCAGTCCTCTTGG
TACATTTTTCTAGTCGCGATAGTTGCCGGCATTTGGAGTTTTGTCCGGGCTCACCGAAATTCGCAGCTATTTCGGGATAA
AGTCGACGAATATGTGCTGAAAATCCCCATAGTGGGTGAAATTCTGCACAAAGCCGCCATGGCCCGTTTTGCCCGCACTC
TGGCCACCACTTTTGCGGCTGGTGTCCCCTTAATCGATGGCCTTGAGTCAGCGGCTGGTGCGTCAGGTAATGCAGTCTAT
CGCAAGGCCCTTTTGAAAATCCGCCAGGAAGTCATGGCCGGTATGCAAATGAACGTGGCCATGCGCACGGTTAACCTGTT
TCCCGACATGCTTATTCAAATGGTGATGATAGGCGAGGAATCAGGCTCTCTGGATAACATGCTCAACAAAGTTGCCAATA
TCTATGAAATGCAGGTGGATGATGCCGTCGATGGTTTATCCAGCCTTATCGAACCCATAATGATGGTGGTGATAGGAACC
TTGGTCGGCGGCCTGATTGTGGGTATGTATCTTCCCATCTTCCAGATGGGTAACGTGGTTGGTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (87-209)

• Type II secretion system (T2SS), protein F (T2SSF) (290-412)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	56.683	95.962	0.544
pilC	Acinetobacter baylyi ADP1	52.709	96.437	0.508
pilC	Acinetobacter baumannii D1279779	52.475	95.962	0.504
pilC	Legionella pneumophila strain ERS1305867	50.372	95.724	0.482
pilC	Vibrio cholerae strain A1552	46.617	94.774	0.442
pilC	Vibrio campbellii strain DS40M4	44.802	95.962	0.43
pilG	Neisseria meningitidis 44/76-A	42.289	95.487	0.404
pilG	Neisseria gonorrhoeae MS11	42.289	95.487	0.404