Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   J1G53_RS11530 Genome accession   NZ_CP071490
Coordinates   2276768..2277406 (+) Length   212 a.a.
NCBI ID   WP_005711167.1    Uniprot ID   B8F752
Organism   Glaesserella parasuis strain GHP1808     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2271768..2282406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G53_RS11485 (J1G53_11485) rplP 2271801..2272211 (-) 411 WP_006249357.1 50S ribosomal protein L16 -
  J1G53_RS11490 (J1G53_11490) rpsC 2272224..2272928 (-) 705 WP_010786465.1 30S ribosomal protein S3 -
  J1G53_RS11495 (J1G53_11495) rplV 2272946..2273278 (-) 333 WP_005706427.1 50S ribosomal protein L22 -
  J1G53_RS11500 (J1G53_11500) rpsS 2273289..2273564 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  J1G53_RS11505 (J1G53_11505) rplB 2273593..2274414 (-) 822 WP_005711173.1 50S ribosomal protein L2 -
  J1G53_RS11510 (J1G53_11510) rplW 2274435..2274740 (-) 306 WP_005599290.1 50S ribosomal protein L23 -
  J1G53_RS11515 (J1G53_11515) rplD 2274737..2275339 (-) 603 WP_005711169.1 50S ribosomal protein L4 -
  J1G53_RS11520 (J1G53_11520) rplC 2275355..2275981 (-) 627 WP_010786462.1 50S ribosomal protein L3 -
  J1G53_RS11525 (J1G53_11525) rpsJ 2275998..2276309 (-) 312 WP_001181005.1 30S ribosomal protein S10 -
  J1G53_RS11530 (J1G53_11530) sxy/tfoX 2276768..2277406 (+) 639 WP_005711167.1 TfoX/Sxy family protein Regulator
  J1G53_RS11535 (J1G53_11535) fumC 2277553..2278947 (+) 1395 WP_010786461.1 class II fumarate hydratase -
  J1G53_RS11540 (J1G53_11540) - 2279129..2280307 (+) 1179 WP_010786460.1 ATP-grasp domain-containing protein -
  J1G53_RS11545 (J1G53_11545) - 2280578..2281549 (+) 972 WP_012621529.1 IS110 family transposase -
  J1G53_RS11550 (J1G53_11550) - 2281605..2282363 (+) 759 WP_010786457.1 esterase family protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24705.70 Da        Isoelectric Point: 9.4406

>NTDB_id=545656 J1G53_RS11530 WP_005711167.1 2276768..2277406(+) (sxy/tfoX) [Glaesserella parasuis strain GHP1808]
MKYIDAKTQHIRNLLYPIIGETKAKTYFSYYGIMKDKAMFALYKDDKFYLHIPNHCLEENIAKNLSLLLDSQTGINLKSF
YLIPPDLLNDLQQVSHWVVESVKDILHTKQNQYMEKKKCIRTLPNMTIQLERTLKKLGVYSIDDLVDRGEIDIFVNLLKI
GVDADQALLFRLHGAINRQYIYTISDKTKQNLLNDADNALYAAGLRKRFNTR

Nucleotide


Download         Length: 639 bp        

>NTDB_id=545656 J1G53_RS11530 WP_005711167.1 2276768..2277406(+) (sxy/tfoX) [Glaesserella parasuis strain GHP1808]
ATGAAATACATTGATGCAAAAACACAACATATCCGTAATCTTCTTTACCCAATCATTGGCGAAACGAAAGCAAAAACCTA
TTTTTCCTATTATGGAATAATGAAAGATAAAGCTATGTTTGCTTTATACAAAGATGATAAATTCTATCTACACATACCAA
ATCATTGCTTAGAGGAAAACATAGCTAAAAATTTATCTCTTCTTCTCGACTCTCAGACTGGCATTAATCTAAAATCCTTC
TATTTAATCCCTCCCGATCTACTTAATGACTTACAACAAGTTTCACATTGGGTCGTCGAAAGTGTGAAAGATATTCTCCA
TACGAAACAAAATCAGTATATGGAAAAGAAAAAATGTATTCGGACGCTGCCGAATATGACAATACAACTCGAAAGGACAT
TAAAAAAACTAGGTGTCTACTCTATTGATGATTTAGTAGATAGGGGCGAGATTGATATTTTCGTCAACCTCCTTAAAATA
GGTGTTGATGCTGATCAAGCTTTATTATTTCGACTTCATGGAGCAATAAATCGACAATATATCTATACGATTTCAGACAA
AACAAAGCAGAATTTACTCAATGATGCAGATAATGCCTTGTATGCTGCCGGACTCCGAAAGCGATTTAATACTAGATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-103)

TfoX C-terminal domain (TfoX_C)

(118-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F752

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Glaesserella parasuis strain SC1401

73.239

100

0.736
  sxy/tfoX Actinobacillus suis H91-0380

43.128

99.528

0.429
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

38.647

97.642

0.377