Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   J1G50_RS11245 Genome accession   NZ_CP071489
Coordinates   2301673..2302314 (+) Length   213 a.a.
NCBI ID   WP_021111957.1    Uniprot ID   A0A836MEW3
Organism   Glaesserella parasuis strain YHP1815     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2296673..2307314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G50_RS11225 (J1G50_11225) mioC 2298256..2298699 (-) 444 WP_005711085.1 FMN-binding protein MioC -
  J1G50_RS11230 (J1G50_11230) ffh 2299064..2300446 (+) 1383 WP_160405021.1 signal recognition particle protein -
  J1G50_RS11240 (J1G50_11240) - 2300721..2301409 (+) 689 Protein_2178 ISAs1 family transposase -
  J1G50_RS11245 (J1G50_11245) sxy/tfoX 2301673..2302314 (+) 642 WP_021111957.1 TfoX/Sxy family DNA transformation protein Regulator
  J1G50_RS11250 (J1G50_11250) fumC 2302462..2303856 (+) 1395 WP_160405529.1 class II fumarate hydratase -
  J1G50_RS11255 (J1G50_11255) - 2304038..2305216 (+) 1179 WP_160405527.1 ATP-grasp domain-containing protein -
  J1G50_RS11260 (J1G50_11260) - 2305351..2306109 (+) 759 WP_021112874.1 esterase family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24775.77 Da        Isoelectric Point: 9.7347

>NTDB_id=545624 J1G50_RS11245 WP_021111957.1 2301673..2302314(+) (sxy/tfoX) [Glaesserella parasuis strain YHP1815]
MKYIDVKTQHIRNLLYPIIGETQAKTYFSYYGIMKDGALFALYKNSKFYLHISGNCLHEVLTNPNISQLSDSKYGINSKS
FYLIPTEILYDLKPISHWITNGIQEIINTKHTQYIKKKRCIRTLPNMTIQLERTLKKLGINSIDELIDRGEVDIFVNLLK
MGIDADQAILFRLYGAINRQYIYTISDKTKQDLLNDANHALYEAGLRKRFNVK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=545624 J1G50_RS11245 WP_021111957.1 2301673..2302314(+) (sxy/tfoX) [Glaesserella parasuis strain YHP1815]
ATGAAATACATTGATGTAAAAACACAACACATTAGAAATTTGCTTTATCCTATAATTGGAGAAACTCAAGCAAAAACATA
TTTTTCCTACTATGGAATAATGAAAGATGGAGCTCTGTTTGCTCTATATAAAAATAGTAAATTCTATCTTCATATCTCAG
GAAACTGTCTACATGAAGTACTAACTAATCCCAATATATCCCAACTGTCCGACTCTAAATATGGTATCAATTCTAAATCT
TTCTATTTGATTCCAACAGAAATTTTATATGATTTAAAACCCATCTCCCATTGGATAACCAATGGTATTCAAGAGATTAT
AAATACAAAACACACCCAATATATAAAAAAGAAAAGATGTATCCGTACCTTACCTAATATGACTATTCAACTAGAAAGGA
CATTGAAAAAGTTAGGTATCAACTCCATCGATGAACTGATTGATAGAGGTGAAGTGGATATATTCGTTAATCTTCTTAAG
ATGGGTATAGATGCTGATCAAGCTATTTTGTTCCGTCTTTATGGAGCAATTAATCGACAATATATTTATACTATCTCTGA
TAAGACTAAGCAGGATCTACTTAATGATGCAAATCATGCTCTATATGAGGCTGGCTTACGTAAGCGCTTCAATGTTAAAT
AA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(120-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836MEW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Glaesserella parasuis strain SC1401

100

100

1
  sxy/tfoX Actinobacillus suis H91-0380

41.429

98.592

0.408
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

39.234

98.122

0.385