Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J1G47_RS05935 Genome accession   NZ_CP071487
Coordinates   1188137..1188679 (+) Length   180 a.a.
NCBI ID   WP_021115958.1    Uniprot ID   A0A836YZ57
Organism   Glaesserella parasuis strain YHP1818     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1183137..1193679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G47_RS05920 (J1G47_05920) - 1184461..1184712 (-) 252 WP_041603108.1 hypothetical protein -
  J1G47_RS05925 (J1G47_05925) - 1184678..1185058 (-) 381 WP_010786782.1 YacL family protein -
  J1G47_RS05930 (J1G47_05930) uvrA 1185143..1187971 (-) 2829 WP_207326498.1 excinuclease ABC subunit UvrA -
  J1G47_RS05935 (J1G47_05935) ssb 1188137..1188679 (+) 543 WP_021115958.1 single-stranded DNA-binding protein Machinery gene
  J1G47_RS05940 (J1G47_05940) - 1188885..1190099 (+) 1215 WP_021114868.1 ATP-binding protein -
  J1G47_RS05945 (J1G47_05945) - 1190171..1190422 (-) 252 Protein_1154 helicase HerA-like domain-containing protein -
  J1G47_RS05950 (J1G47_05950) rhlB 1190489..1191709 (-) 1221 WP_207326499.1 ATP-dependent RNA helicase RhlB -
  J1G47_RS05955 (J1G47_05955) - 1191773..1192045 (-) 273 WP_005712616.1 HigA family addiction module antitoxin -
  J1G47_RS05960 (J1G47_05960) - 1192056..1192334 (-) 279 WP_012621703.1 type II toxin-antitoxin system RelE/ParE family toxin -
  J1G47_RS05965 (J1G47_05965) argF 1192481..1193491 (+) 1011 WP_005712612.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19938.78 Da        Isoelectric Point: 4.9833

>NTDB_id=545581 J1G47_RS05935 WP_021115958.1 1188137..1188679(+) (ssb) [Glaesserella parasuis strain YHP1818]
MAGVNKVIIVGNLGNDPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSSGGDFGGNQGSGWNQAPAQTNYNQGGYSDNYAQNNNFNGGNATRPQPA
QKPAAQAEPPMDNFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=545581 J1G47_RS05935 WP_021115958.1 1188137..1188679(+) (ssb) [Glaesserella parasuis strain YHP1818]
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAACGACCCTGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGTGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAAGTCACTGAATGGC
ACCGTATCGTTTTCTTCCGTCGTCAAGCAGAAGTAGCAGGACAATACTTACGCAAAGGTTCAAAAGTCTATGTAGAAGGC
AAGCTCAAAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTACTACAAAT
GTTAGACAGCCGTAGCAGTGGCGGTGATTTTGGCGGAAATCAAGGTAGCGGTTGGAACCAAGCACCAGCGCAAACCAACT
ACAATCAAGGCGGCTACAGCGACAACTATGCTCAAAATAACAACTTCAATGGGGGCAACGCAACCAGACCGCAACCAGCC
CAAAAACCTGCGGCTCAAGCAGAACCACCAATGGATAATTTTGATGATGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836YZ57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

100

100

1
  ssb Vibrio cholerae strain A1552

50.265

100

0.528
  ssb Neisseria gonorrhoeae MS11

44.505

100

0.45
  ssb Neisseria meningitidis MC58

43.956

100

0.444