Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   J1F19_RS21920 Genome accession   NZ_CP071439
Coordinates   4699057..4699686 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EcPNK004     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4694057..4704686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1F19_RS21900 (J1F19_21900) ycbZ 4694445..4696205 (-) 1761 WP_001586869.1 Lon protease family protein -
  J1F19_RS21905 (J1F19_21905) matP 4696391..4696843 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  J1F19_RS21910 (J1F19_21910) ompA 4696920..4697972 (-) 1053 WP_207291677.1 porin OmpA -
  J1F19_RS21915 (J1F19_21915) sulA 4698329..4698838 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  J1F19_RS21920 (J1F19_21920) sxy/tfoX 4699057..4699686 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  J1F19_RS21925 (J1F19_21925) yccS 4699649..4701811 (-) 2163 WP_000875037.1 YccS family putative transporter -
  J1F19_RS21930 (J1F19_21930) yccF 4701821..4702267 (-) 447 WP_001261235.1 YccF domain-containing protein -
  J1F19_RS21935 (J1F19_21935) helD 4702390..4704444 (+) 2055 WP_001305911.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=545319 J1F19_RS21920 WP_000839153.1 4699057..4699686(+) (sxy/tfoX) [Escherichia coli strain EcPNK004]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=545319 J1F19_RS21920 WP_000839153.1 4699057..4699686(+) (sxy/tfoX) [Escherichia coli strain EcPNK004]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGTGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1