Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | J0W34_RS14530 | Genome accession | NZ_CP071321 |
| Coordinates | 3113329..3114564 (+) | Length | 411 a.a. |
| NCBI ID | WP_230969261.1 | Uniprot ID | - |
| Organism | Nitrogeniibacter aestuarii strain H1-1-2A | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3108329..3119564
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J0W34_RS14515 | - | 3109335..3110162 (+) | 828 | WP_227817189.1 | inner membrane protein YpjD | - |
| J0W34_RS14520 | - | 3110227..3111495 (+) | 1269 | WP_227817190.1 | HlyC/CorC family transporter | - |
| J0W34_RS14525 | pilB | 3111594..3113312 (+) | 1719 | WP_230969260.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| J0W34_RS14530 | pilC | 3113329..3114564 (+) | 1236 | WP_230969261.1 | type II secretion system F family protein | Machinery gene |
| J0W34_RS14535 | pilD | 3114581..3115432 (+) | 852 | WP_230969262.1 | A24 family peptidase | Machinery gene |
| J0W34_RS14540 | - | 3115534..3115812 (+) | 279 | WP_227817194.1 | FmdB family zinc ribbon protein | - |
| J0W34_RS14545 | - | 3115820..3116452 (+) | 633 | WP_227817195.1 | DUF502 domain-containing protein | - |
| J0W34_RS14550 | aspS | 3116503..3118299 (+) | 1797 | WP_230969263.1 | aspartate--tRNA ligase | - |
Sequence
Protein
Download Length: 411 a.a. Molecular weight: 44635.61 Da Isoelectric Point: 10.2777
>NTDB_id=545011 J0W34_RS14530 WP_230969261.1 3113329..3114564(+) (pilC) [Nitrogeniibacter aestuarii strain H1-1-2A]
MATATRTAQRTAKAKEEALYDWEGKDKKGKIIRGEMRAGGEAVVQATLRRQGVMVSKIKKRKLARGKRITQKDITLFTRQ
LATMMKSGVPLLQAFDITIKGASNPSLGRLLNDVRNDVETGSNLSQAFRKHPVHFDQLFCNLVAAGEQAGILDTLLDRLA
TYKEKMLAIKSKIKSALFYPASVIVVAGIVISVMMLFVIPEFKNVFTSFGADLPGPTLVVIAMSDFMVANWYIVFGAIGA
AVVALSMAYKRSEKAQNTMDKLILQFPVIGDVVRKATIARWTRTLSTMFMAGVPLVEALDSVGGASGNHVYRQATKQIQA
DVSTGTSLTIAMQGAKVFPTMVVQMVSIGEESGQLDGMLSKVADFFEQEVDDAVAGLSQLLEPMIMVFLGVVIGGLIVAM
YLPIFKIGQVV
MATATRTAQRTAKAKEEALYDWEGKDKKGKIIRGEMRAGGEAVVQATLRRQGVMVSKIKKRKLARGKRITQKDITLFTRQ
LATMMKSGVPLLQAFDITIKGASNPSLGRLLNDVRNDVETGSNLSQAFRKHPVHFDQLFCNLVAAGEQAGILDTLLDRLA
TYKEKMLAIKSKIKSALFYPASVIVVAGIVISVMMLFVIPEFKNVFTSFGADLPGPTLVVIAMSDFMVANWYIVFGAIGA
AVVALSMAYKRSEKAQNTMDKLILQFPVIGDVVRKATIARWTRTLSTMFMAGVPLVEALDSVGGASGNHVYRQATKQIQA
DVSTGTSLTIAMQGAKVFPTMVVQMVSIGEESGQLDGMLSKVADFFEQEVDDAVAGLSQLLEPMIMVFLGVVIGGLIVAM
YLPIFKIGQVV
Nucleotide
Download Length: 1236 bp
>NTDB_id=545011 J0W34_RS14530 WP_230969261.1 3113329..3114564(+) (pilC) [Nitrogeniibacter aestuarii strain H1-1-2A]
ATGGCAACCGCGACCCGAACTGCACAAAGAACGGCAAAAGCCAAGGAAGAGGCCCTCTACGACTGGGAGGGCAAGGACAA
GAAAGGCAAGATCATCCGCGGCGAAATGCGCGCGGGCGGTGAGGCGGTGGTGCAAGCCACGCTGCGTCGCCAGGGCGTGA
TGGTCTCCAAGATCAAGAAACGGAAGCTTGCCCGCGGAAAGAGAATCACCCAGAAGGACATCACGCTCTTCACTCGCCAG
CTGGCGACCATGATGAAATCCGGCGTTCCCCTGCTGCAAGCATTCGACATCACCATCAAGGGCGCCAGCAACCCGTCTTT
GGGGCGACTGCTGAACGATGTCCGCAATGACGTTGAGACCGGCAGCAATCTGTCCCAGGCATTCCGGAAGCACCCTGTTC
ATTTCGATCAGCTGTTCTGCAACCTCGTCGCGGCAGGCGAACAGGCCGGTATTCTGGACACGCTGCTGGATCGACTGGCG
ACATATAAAGAAAAGATGCTTGCGATCAAGAGCAAGATCAAGTCCGCGCTTTTCTATCCGGCATCCGTGATTGTTGTTGC
AGGTATTGTGATCTCCGTCATGATGCTGTTCGTTATTCCAGAATTCAAAAACGTGTTCACCAGTTTTGGCGCTGACCTCC
CAGGGCCAACACTTGTCGTGATCGCCATGTCCGATTTCATGGTGGCTAACTGGTACATCGTTTTCGGCGCCATTGGTGCG
GCTGTCGTCGCGCTTTCCATGGCCTATAAACGCAGCGAGAAAGCCCAGAACACGATGGACAAACTGATTCTTCAGTTTCC
CGTCATTGGCGACGTCGTGCGAAAAGCCACAATCGCACGCTGGACACGTACGCTGTCGACCATGTTCATGGCCGGCGTTC
CACTTGTCGAAGCGCTCGATTCCGTGGGTGGCGCCTCGGGCAACCATGTCTATCGTCAGGCAACGAAGCAGATCCAGGCC
GACGTAAGTACAGGAACAAGTCTCACGATTGCCATGCAGGGCGCCAAGGTTTTCCCAACTATGGTGGTACAGATGGTGTC
GATCGGCGAAGAATCGGGACAGCTTGACGGCATGCTGAGCAAAGTGGCCGATTTCTTCGAACAGGAAGTCGATGATGCCG
TGGCAGGTCTGTCGCAATTGCTTGAGCCCATGATCATGGTTTTCCTGGGGGTGGTGATCGGCGGCCTCATCGTTGCCATG
TATCTTCCGATCTTCAAGATCGGCCAAGTCGTCTGA
ATGGCAACCGCGACCCGAACTGCACAAAGAACGGCAAAAGCCAAGGAAGAGGCCCTCTACGACTGGGAGGGCAAGGACAA
GAAAGGCAAGATCATCCGCGGCGAAATGCGCGCGGGCGGTGAGGCGGTGGTGCAAGCCACGCTGCGTCGCCAGGGCGTGA
TGGTCTCCAAGATCAAGAAACGGAAGCTTGCCCGCGGAAAGAGAATCACCCAGAAGGACATCACGCTCTTCACTCGCCAG
CTGGCGACCATGATGAAATCCGGCGTTCCCCTGCTGCAAGCATTCGACATCACCATCAAGGGCGCCAGCAACCCGTCTTT
GGGGCGACTGCTGAACGATGTCCGCAATGACGTTGAGACCGGCAGCAATCTGTCCCAGGCATTCCGGAAGCACCCTGTTC
ATTTCGATCAGCTGTTCTGCAACCTCGTCGCGGCAGGCGAACAGGCCGGTATTCTGGACACGCTGCTGGATCGACTGGCG
ACATATAAAGAAAAGATGCTTGCGATCAAGAGCAAGATCAAGTCCGCGCTTTTCTATCCGGCATCCGTGATTGTTGTTGC
AGGTATTGTGATCTCCGTCATGATGCTGTTCGTTATTCCAGAATTCAAAAACGTGTTCACCAGTTTTGGCGCTGACCTCC
CAGGGCCAACACTTGTCGTGATCGCCATGTCCGATTTCATGGTGGCTAACTGGTACATCGTTTTCGGCGCCATTGGTGCG
GCTGTCGTCGCGCTTTCCATGGCCTATAAACGCAGCGAGAAAGCCCAGAACACGATGGACAAACTGATTCTTCAGTTTCC
CGTCATTGGCGACGTCGTGCGAAAAGCCACAATCGCACGCTGGACACGTACGCTGTCGACCATGTTCATGGCCGGCGTTC
CACTTGTCGAAGCGCTCGATTCCGTGGGTGGCGCCTCGGGCAACCATGTCTATCGTCAGGCAACGAAGCAGATCCAGGCC
GACGTAAGTACAGGAACAAGTCTCACGATTGCCATGCAGGGCGCCAAGGTTTTCCCAACTATGGTGGTACAGATGGTGTC
GATCGGCGAAGAATCGGGACAGCTTGACGGCATGCTGAGCAAAGTGGCCGATTTCTTCGAACAGGAAGTCGATGATGCCG
TGGCAGGTCTGTCGCAATTGCTTGAGCCCATGATCATGGTTTTCCTGGGGGTGGTGATCGGCGGCCTCATCGTTGCCATG
TATCTTCCGATCTTCAAGATCGGCCAAGTCGTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
51.99 |
97.81 |
0.509 |
| pilC | Legionella pneumophila strain ERS1305867 |
52.525 |
96.35 |
0.506 |
| pilC | Acinetobacter baumannii D1279779 |
50.99 |
98.297 |
0.501 |
| pilG | Neisseria gonorrhoeae MS11 |
50.125 |
97.08 |
0.487 |
| pilC | Acinetobacter baylyi ADP1 |
50 |
96.837 |
0.484 |
| pilG | Neisseria meningitidis 44/76-A |
49.624 |
97.08 |
0.482 |
| pilC | Vibrio cholerae strain A1552 |
42.929 |
96.35 |
0.414 |
| pilC | Vibrio campbellii strain DS40M4 |
42.145 |
97.567 |
0.411 |
| pilC | Thermus thermophilus HB27 |
38.404 |
97.567 |
0.375 |