Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   LO007_RS15100 Genome accession   NZ_CP087312
Coordinates   3204655..3205170 (+) Length   171 a.a.
NCBI ID   WP_000477151.1    Uniprot ID   V5VA61
Organism   Acinetobacter baumannii strain OC059     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3199655..3210170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO007_RS15080 - 3199995..3201455 (+) 1461 WP_031999345.1 amino acid permease -
  LO007_RS15085 - 3201732..3202937 (+) 1206 WP_000512699.1 RtcB family protein -
  LO007_RS15090 - 3202956..3203099 (+) 144 WP_162138624.1 hypothetical protein -
  LO007_RS15095 omp38 3203224..3204273 (-) 1050 WP_000777873.1 outer membrane protein Omp38 -
  LO007_RS15100 fimT 3204655..3205170 (+) 516 WP_000477151.1 GspH/FimT family pseudopilin Machinery gene
  LO007_RS15105 - 3205279..3206454 (+) 1176 WP_000129965.1 thiolase family protein -
  LO007_RS15110 - 3206581..3207024 (+) 444 WP_001176580.1 VOC family protein -
  LO007_RS15115 - 3207067..3207420 (-) 354 WP_031999349.1 multidrug efflux SMR transporter -
  LO007_RS15120 - 3207505..3207990 (-) 486 WP_000935248.1 DUF934 domain-containing protein -
  LO007_RS15125 - 3207983..3209626 (-) 1644 WP_002061398.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19606.86 Da        Isoelectric Point: 8.8196

>NTDB_id=544970 LO007_RS15100 WP_000477151.1 3204655..3205170(+) (fimT) [Acinetobacter baumannii strain OC059]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=544970 LO007_RS15100 WP_000477151.1 3204655..3205170(+) (fimT) [Acinetobacter baumannii strain OC059]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTTCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VA61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427