Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   J0W33_RS06575 Genome accession   NZ_CP071319
Coordinates   1375508..1376227 (-) Length   239 a.a.
NCBI ID   WP_005180513.1    Uniprot ID   N9KYM2
Organism   Acinetobacter indicus strain GXNN62X4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1370508..1381227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0W33_RS06555 (J0W33_06555) aroB 1371098..1372180 (-) 1083 WP_075167859.1 3-dehydroquinate synthase -
  J0W33_RS06560 (J0W33_06560) aroK 1372203..1372745 (-) 543 WP_075167858.1 shikimate kinase AroK -
  J0W33_RS06565 (J0W33_06565) pilQ 1372782..1374920 (-) 2139 WP_180182089.1 type IV pilus secretin PilQ Machinery gene
  J0W33_RS06570 (J0W33_06570) pilP 1374981..1375508 (-) 528 WP_104489345.1 pilus assembly protein PilP Machinery gene
  J0W33_RS06575 (J0W33_06575) pilO 1375508..1376227 (-) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  J0W33_RS06580 (J0W33_06580) pilN 1376224..1376859 (-) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  J0W33_RS06585 (J0W33_06585) pilM 1376859..1377917 (-) 1059 WP_016658445.1 pilus assembly protein PilM Machinery gene
  J0W33_RS06590 (J0W33_06590) ponA 1378089..1380665 (+) 2577 WP_180182074.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27087.71 Da        Isoelectric Point: 5.1311

>NTDB_id=544949 J0W33_RS06575 WP_005180513.1 1375508..1376227(-) (pilO) [Acinetobacter indicus strain GXNN62X4]
MSLDQYEEMNQDPVAAPKKKMTLDKFLQQWNTLDPNNYGSWPFSVKLTIWIFIIILIAFLGYFLAIKPKLDAISNARAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLQQLPKETEIPGLVEDVNVTGVNSGLRFKNIRLENEIKQEFFIEQP
ISIEATGDYHAFGSFVSGTAALPRIVTMHDFTITAGENKEKKTDIPQITYVAKAKTYRYVGNTDAQAGNSTTPATGAAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=544949 J0W33_RS06575 WP_005180513.1 1375508..1376227(-) (pilO) [Acinetobacter indicus strain GXNN62X4]
ATGAGTCTCGATCAATATGAAGAAATGAATCAGGATCCTGTTGCTGCGCCAAAGAAAAAAATGACGCTGGATAAATTCCT
GCAGCAATGGAATACCTTAGATCCGAATAACTATGGCAGCTGGCCGTTTTCCGTCAAGCTGACCATCTGGATCTTTATCA
TTATTTTAATTGCCTTCCTGGGCTATTTCCTGGCCATCAAGCCGAAGCTGGATGCAATTTCCAATGCGCGTGCACAAGAG
CAGAACCTGCTGAATGAGTTTCGTGAAAAAGATTCCAAACTGCGTAACTTGCAGCAATATCAGGCGCAGTTACAGGAAAT
GGAAGCCAACTTTAACCAGCAGCTACAACAGTTGCCAAAAGAAACCGAAATTCCAGGTCTGGTTGAAGATGTGAACGTTA
CGGGCGTGAATTCAGGCTTAAGATTTAAAAATATCCGTCTGGAAAATGAAATCAAGCAAGAGTTCTTTATCGAGCAGCCA
ATTTCGATTGAAGCCACCGGTGATTATCACGCTTTTGGTTCTTTTGTCAGTGGTACAGCCGCTTTACCGCGAATTGTGAC
CATGCATGATTTCACCATTACTGCCGGTGAAAACAAGGAAAAGAAAACCGATATTCCACAAATTACCTATGTCGCGAAAG
CCAAGACCTATCGCTATGTCGGGAATACCGATGCACAGGCAGGGAATAGCACGACTCCAGCCACAGGAGCAGCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KYM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

69.748

99.582

0.695
  comO Acinetobacter baylyi ADP1

67.213

100

0.686