Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   J0W33_RS06580 Genome accession   NZ_CP071319
Coordinates   1376224..1376859 (-) Length   211 a.a.
NCBI ID   WP_005180516.1    Uniprot ID   N9MGL9
Organism   Acinetobacter indicus strain GXNN62X4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1371224..1381859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0W33_RS06560 (J0W33_06560) aroK 1372203..1372745 (-) 543 WP_075167858.1 shikimate kinase AroK -
  J0W33_RS06565 (J0W33_06565) pilQ 1372782..1374920 (-) 2139 WP_180182089.1 type IV pilus secretin PilQ Machinery gene
  J0W33_RS06570 (J0W33_06570) pilP 1374981..1375508 (-) 528 WP_104489345.1 pilus assembly protein PilP Machinery gene
  J0W33_RS06575 (J0W33_06575) pilO 1375508..1376227 (-) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  J0W33_RS06580 (J0W33_06580) pilN 1376224..1376859 (-) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  J0W33_RS06585 (J0W33_06585) pilM 1376859..1377917 (-) 1059 WP_016658445.1 pilus assembly protein PilM Machinery gene
  J0W33_RS06590 (J0W33_06590) ponA 1378089..1380665 (+) 2577 WP_180182074.1 penicillin-binding protein PBP1a -
  J0W33_RS06595 (J0W33_06595) - 1380708..1381511 (-) 804 WP_180182075.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23494.92 Da        Isoelectric Point: 7.9757

>NTDB_id=544950 J0W33_RS06580 WP_005180516.1 1376224..1376859(-) (pilN) [Acinetobacter indicus strain GXNN62X4]
MAKINLLPWRDELREKRKKEFIAVCIGAALIGVLAVTLAWFYYNHKLQDQEQANQLVISTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQSQRPVAVRLVDELVRVTPSSMYLTKVARIGNKFTFEGKAESPNTVAEFLRNLEASPWYRNAFMNSFLA
VEENKNKAPSSVVPRVEESYGSFVVTADLDEIALPGTAPASGTQATAGAVQ

Nucleotide


Download         Length: 636 bp        

>NTDB_id=544950 J0W33_RS06580 WP_005180516.1 1376224..1376859(-) (pilN) [Acinetobacter indicus strain GXNN62X4]
ATGGCAAAAATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAAAAACGAAAAAAAGAATTTATTGCGGTTTGTATTGG
GGCTGCATTAATTGGGGTGCTGGCCGTCACGCTGGCATGGTTCTATTACAATCATAAACTTCAAGATCAGGAACAGGCCA
ATCAGCTGGTGATCAGTACCAACCAGAATCTGGATGTACAGTTAAAGTCGCTGGAAGGCCTGCAAGAGCAGCGTAATGCC
ATTGTCGAGCGCATGAAGCTGATTCAGGGTCTGCAAAGTCAGCGTCCGGTCGCGGTACGTTTGGTCGATGAGCTGGTCCG
CGTTACCCCAAGTAGCATGTATTTGACCAAAGTGGCCCGTATTGGCAATAAATTTACCTTTGAAGGCAAGGCCGAAAGTC
CAAACACGGTAGCAGAGTTCCTGCGTAATCTGGAAGCATCGCCATGGTATCGTAACGCCTTCATGAATTCTTTCTTGGCC
GTTGAAGAAAATAAAAACAAGGCACCAAGTTCGGTTGTTCCACGGGTAGAAGAAAGCTATGGCAGCTTCGTGGTAACGGC
AGATTTGGATGAAATTGCACTTCCAGGCACAGCACCTGCGTCTGGTACTCAAGCAACAGCGGGGGCAGTACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9MGL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

71.09

100

0.711
  comN Acinetobacter baylyi ADP1

70.616

100

0.706