Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LO005_RS15445 Genome accession   NZ_CP087309
Coordinates   3212170..3212580 (-) Length   136 a.a.
NCBI ID   WP_001978433.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC068     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3207170..3217580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO005_RS15415 - 3207256..3207525 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  LO005_RS15420 rapZ 3207522..3208373 (-) 852 WP_000821671.1 RNase adapter RapZ -
  LO005_RS15425 panC 3208396..3209244 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  LO005_RS15430 panB 3209248..3210057 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  LO005_RS15435 folK 3210103..3210585 (-) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LO005_RS15440 pcnB 3210582..3212045 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  LO005_RS15445 comEA 3212170..3212580 (-) 411 WP_001978433.1 ComEA family DNA-binding protein Machinery gene
  LO005_RS15450 mazG 3212549..3213355 (-) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  LO005_RS15455 - 3213467..3214240 (+) 774 WP_029423654.1 SDR family oxidoreductase -
  LO005_RS15460 - 3214285..3216591 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15687.00 Da        Isoelectric Point: 10.4475

>NTDB_id=544892 LO005_RS15445 WP_001978433.1 3212170..3212580(-) (comEA) [Acinetobacter baumannii strain OC068]
MQYSMRFWKNKYFLLIMLCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=544892 LO005_RS15445 WP_001978433.1 3212170..3212580(-) (comEA) [Acinetobacter baumannii strain OC068]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTCTTTTAATAATGTTGTGCTTGGGGGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAGTGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412