Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   JZY07_RS03175 Genome accession   NZ_CP071305
Coordinates   617600..618304 (+) Length   234 a.a.
NCBI ID   WP_004298854.1    Uniprot ID   A0A0K2E6P6
Organism   Streptococcus suis strain SC183     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 612600..623304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS03150 (JZY07_03150) - 613631..614362 (+) 732 WP_153309169.1 hypothetical protein -
  JZY07_RS03155 (JZY07_03155) - 614408..615067 (-) 660 WP_024384909.1 amino acid ABC transporter permease -
  JZY07_RS03160 (JZY07_03160) - 615082..615780 (-) 699 WP_014637677.1 amino acid ABC transporter permease -
  JZY07_RS03165 (JZY07_03165) - 615795..616634 (-) 840 WP_206974778.1 transporter substrate-binding domain-containing protein -
  JZY07_RS03170 (JZY07_03170) - 616645..617406 (-) 762 WP_029188263.1 amino acid ABC transporter ATP-binding protein -
  JZY07_RS03175 (JZY07_03175) micA 617600..618304 (+) 705 WP_004298854.1 response regulator YycF Regulator
  JZY07_RS03180 (JZY07_03180) micB 618297..619646 (+) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  JZY07_RS03185 (JZY07_03185) vicX 619653..620456 (+) 804 WP_044681030.1 MBL fold metallo-hydrolase Regulator
  JZY07_RS03190 (JZY07_03190) vga(F) 620813..622198 (+) 1386 WP_206974779.1 ABC-F type ribosomal protection protein Vga(F) -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26781.77 Da        Isoelectric Point: 4.8957

>NTDB_id=544855 JZY07_RS03175 WP_004298854.1 617600..618304(+) (micA) [Streptococcus suis strain SC183]
MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDGLEVARTIRKTSNVPILMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSELAETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELT
HREFELLHHLAKHLGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYFIKGND

Nucleotide


Download         Length: 705 bp        

>NTDB_id=544855 JZY07_RS03175 WP_004298854.1 617600..618304(+) (micA) [Streptococcus suis strain SC183]
ATGAAAAAAATATTAATTGTAGATGATGAAAAACCAATCTCAGATATTATTAAGTTTAATATGACGCGCGAGGGATATGA
AGTTGTGACAGCTTTCGATGGACGTGAAGCCTTGGAAGTCTTTGAGGCTGAGTTTCCTGACATTGTCATTTTGGACTTGA
TGCTGCCAGAATTGGACGGACTAGAAGTCGCTCGAACGATTCGTAAGACCAGCAATGTTCCAATCTTGATGTTATCTGCT
AAAGATAGCGAATTTGATAAGGTTATCGGGCTTGAAATCGGGGCGGATGATTATGTGACCAAGCCCTTCTCTAATCGTGA
ATTGCAGGCGCGTGTTAAGGCTCTTCTTCGTCGTAGTGAATTGGCAGAGACGCAGACAAATATTGAGTCAACAGGGACTC
CAGAGTTGGTGATTGGCGATTTGGTCATTCTGCCTGATGCGTTTGTCGCTAAGAAGCATGGCAAAGAGCTGGAGCTGACC
CATCGTGAGTTTGAATTGCTCCACCATCTGGCCAAACACTTAGGTCAGGTTATGACTCGAGAACATCTATTGGAAACAGT
TTGGGGTTATGATTACTTTGGTGATGTCCGCACGGTGGATGTAACGATTCGTCGTCTGCGTGAGAAAATTGAAGATACAC
CAAGCAGACCAGAATACATTCTTACTCGTCGCGGAGTGGGATATTTTATAAAAGGAAATGATTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K2E6P6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

81.974

99.573

0.816
  vicR Streptococcus mutans UA159

80.426

100

0.808
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.783

98.291

0.44
  covR Streptococcus salivarius strain HSISS4

43.723

98.718

0.432
  scnR Streptococcus mutans UA159

38.095

98.718

0.376