Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LO014_RS15150 Genome accession   NZ_CP087300
Coordinates   3039025..3039387 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain OC061     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3034025..3044387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO014_RS15140 - 3036303..3038381 (-) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -
  LO014_RS15145 - 3038428..3038964 (-) 537 WP_000729757.1 chemotaxis protein CheW -
  LO014_RS15150 pilH 3039025..3039387 (-) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  LO014_RS15155 pilG 3039411..3039794 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  LO014_RS15160 - 3040077..3040715 (+) 639 WP_258583562.1 hypothetical protein -
  LO014_RS15165 - 3040775..3041893 (+) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -
  LO014_RS15170 - 3041909..3042550 (+) 642 Protein_2966 efflux RND transporter permease subunit -
  LO014_RS15175 - 3042554..3043048 (-) 495 WP_001003818.1 IS630 family transposase -
  LO014_RS15180 - 3043096..3043401 (-) 306 WP_000122230.1 IS630 transposase-related protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=544732 LO014_RS15150 WP_000101096.1 3039025..3039387(-) (pilH) [Acinetobacter baumannii strain OC061]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=544732 LO014_RS15150 WP_000101096.1 3039025..3039387(-) (pilH) [Acinetobacter baumannii strain OC061]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCGGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392