Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LO740_RS16410 Genome accession   NZ_CP087294
Coordinates   3376113..3376850 (+) Length   245 a.a.
NCBI ID   WP_000197684.1    Uniprot ID   -
Organism   Escherichia coli strain APEC E956     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3371113..3381850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO740_RS16395 (LO740_16365) clpC 3371567..3374140 (-) 2574 WP_001317994.1 ATP-dependent chaperone ClpB Regulator
  LO740_RS16400 (LO740_16370) yfiH 3374270..3375001 (-) 732 WP_000040126.1 purine nucleoside phosphorylase YfiH -
  LO740_RS16405 (LO740_16375) rluD 3374998..3375978 (-) 981 WP_000079108.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LO740_RS16410 (LO740_16380) comL 3376113..3376850 (+) 738 WP_000197684.1 outer membrane protein assembly factor BamD Machinery gene
  LO740_RS16415 (LO740_16385) insG 3376954..3378301 (+) 1348 Protein_3211 IS4-like element IS4 family transposase -
  LO740_RS16420 (LO740_16390) raiA 3378562..3378903 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  LO740_RS16425 (LO740_16395) pheL 3379007..3379054 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  LO740_RS16430 (LO740_16400) pheA 3379153..3380313 (+) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  LO740_RS16435 (LO740_16405) tyrA 3380356..3381477 (-) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27811.36 Da        Isoelectric Point: 6.4874

>NTDB_id=544565 LO740_RS16410 WP_000197684.1 3376113..3376850(+) (comL) [Escherichia coli strain APEC E956]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQLNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=544565 LO740_RS16410 WP_000197684.1 3376113..3376850(+) (comL) [Escherichia coli strain APEC E956]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGTTGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

39.167

97.959

0.384