Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   LO741_RS23645 Genome accession   NZ_CP087290
Coordinates   4809377..4810033 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain APEC 102026     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4804377..4815033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO741_RS23615 (LO741_23570) dcyD 4805255..4806241 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  LO741_RS23620 (LO741_23575) tcyL 4806256..4806924 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  LO741_RS23625 (LO741_23580) tcyN 4806921..4807673 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  LO741_RS23630 (LO741_23585) sdiA 4807905..4808627 (+) 723 WP_001154273.1 transcriptional regulator SdiA -
  LO741_RS23635 (LO741_23590) yecF 4808694..4808918 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  LO741_RS23640 (LO741_23595) yecU 4808905..4809081 (-) 177 WP_000590344.1 protein YecU -
  LO741_RS26720 - 4809119..4809235 (-) 117 WP_001302039.1 hypothetical protein -
  LO741_RS23645 (LO741_23600) letA 4809377..4810033 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  LO741_RS23650 (LO741_23605) uvrC 4810030..4811862 (+) 1833 WP_187183321.1 excinuclease ABC subunit UvrC Machinery gene
  LO741_RS23655 (LO741_23610) pgsA 4811919..4812467 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LO741_RS23675 (LO741_23630) yecA 4813117..4813782 (+) 666 WP_000847885.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=544516 LO741_RS23645 WP_000611335.1 4809377..4810033(+) (letA) [Escherichia coli strain APEC 102026]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=544516 LO741_RS23645 WP_000611335.1 4809377..4810033(+) (letA) [Escherichia coli strain APEC 102026]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486