Detailed information NTG0544256

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LPB19_RS07010
• Genome accession: NZ_CP071247
• Coordinates: 1545167..1546552 (-)
• Length: 461 a.a.
• NCBI ID: WP_206645357.1
• Uniprot ID: -
• Organism: Marinobacter salinisoli strain LPB0319
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1540167..1551552

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPB19_RS06995 (LPB19_06995)	-	1540368..1543961 (+)	3594	WP_206645355.1	pilus assembly protein	-
LPB19_RS07000 (LPB19_07000)	-	1543982..1544467 (+)	486	WP_323127908.1	type IV pilin protein	-
LPB19_RS17195 (LPB19_07005)	-	1544475..1545059 (-)	585	WP_407943942.1	GspH/FimT family pseudopilin	-
LPB19_RS07010 (LPB19_07010)	pilR	1545167..1546552 (-)	1386	WP_206645357.1	sigma-54 dependent transcriptional regulator	Regulator
LPB19_RS07015 (LPB19_07015)	-	1546609..1548252 (-)	1644	WP_206645358.1	PAS domain-containing sensor histidine kinase	-
LPB19_RS07020 (LPB19_07020)	-	1548345..1550009 (+)	1665	WP_206645359.1	NAD+ synthase	-
LPB19_RS07025 (LPB19_07025)	-	1550029..1550862 (-)	834	WP_206645360.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 50382.60 Da
• Isoelectric Point: 4.9338

>NTDB_id=544256 LPB19_RS07010 WP_206645357.1 1545167..1546552(-) (pilR) [Marinobacter salinisoli strain LPB0319]
MTTPPSALIIDDEPDIRDLLEITLTRMGIEVTTAADLSQAYAALKHQTFDLCLTDMNLPDGNGIELVQWIQEQAPATPVA
VITAYGSMDTAIESLKAGAFDFVSKPVELPRLRELVNSALKLASPHPEQPATEGDPGLILGNSAHIRKLRSQTRKLARSQ
APVFISGESGSGKELVARTIHLQGPRSDGPFIAVNCGAIPSELMESEFFGHKKGSFTGAVENKDGLFRSANGGTLFLDEV
ADLPLAMQVKLLRAIQEKAVRPVGETKEVPVDIRVLSATHKNLAELVQEGLFRQDLFYRINVIELAVPPLRERSDDIPLL
ANHILNRIAREYECSAARLTAAALERLQGYAFPGNVRELENALERAFTLCDDDTIDAGDLQLGNGKQPPVPGLTPGERQP
LAADMTIPEGDIDLEGYLETIERQTIEKALEATRWNKTAAAKKLGITFRALRYRLKKLGME

Nucleotide

• Length: 1386 bp

>NTDB_id=544256 LPB19_RS07010 WP_206645357.1 1545167..1546552(-) (pilR) [Marinobacter salinisoli strain LPB0319]
ATGACCACGCCCCCGTCCGCACTGATTATTGATGACGAACCGGACATCCGGGATCTGCTGGAAATTACCCTTACGCGAAT
GGGTATCGAGGTGACGACGGCAGCAGACCTGTCACAGGCCTACGCGGCGCTGAAACATCAGACCTTTGATCTGTGCCTGA
CGGACATGAACCTGCCGGATGGCAATGGCATAGAGCTGGTTCAGTGGATACAGGAACAGGCGCCGGCCACACCCGTTGCA
GTGATAACCGCCTACGGCAGCATGGACACGGCCATTGAATCCCTCAAGGCTGGCGCCTTCGATTTCGTCTCGAAGCCGGT
GGAACTGCCCCGGCTGCGTGAACTGGTTAACAGTGCATTGAAGCTCGCCTCCCCGCATCCGGAACAACCCGCGACGGAAG
GCGATCCGGGGCTGATCCTGGGTAACTCTGCCCACATTCGCAAACTCCGAAGCCAGACCCGAAAGCTCGCACGAAGTCAG
GCTCCGGTGTTCATCAGCGGTGAATCCGGCAGCGGTAAAGAACTGGTCGCCCGCACCATTCATCTGCAGGGCCCTCGAAG
CGATGGCCCCTTCATCGCGGTAAACTGCGGCGCCATCCCCTCGGAACTGATGGAAAGCGAGTTCTTCGGCCACAAAAAAG
GCAGTTTCACCGGCGCGGTGGAGAACAAAGACGGCCTGTTCCGCTCAGCCAACGGCGGTACGCTGTTCCTCGACGAAGTG
GCGGATCTGCCGCTCGCTATGCAGGTGAAGCTGTTGCGGGCCATTCAGGAAAAAGCCGTGCGCCCGGTGGGCGAAACCAA
AGAAGTTCCGGTCGATATCCGTGTGCTGAGTGCTACCCACAAGAACCTGGCCGAACTGGTGCAGGAAGGTCTGTTCAGAC
AGGACCTGTTCTACCGAATTAACGTCATTGAACTGGCCGTGCCGCCTCTGCGTGAACGCAGCGACGATATCCCACTGCTG
GCCAACCACATCCTGAACCGCATCGCGCGCGAATACGAGTGCTCAGCTGCCCGACTCACCGCAGCAGCGCTGGAGCGCCT
GCAAGGCTATGCCTTTCCCGGCAACGTGCGTGAACTGGAAAACGCACTGGAACGCGCGTTCACCCTGTGTGACGACGACA
CCATTGACGCCGGCGACCTGCAACTGGGCAACGGCAAGCAACCCCCGGTTCCGGGATTGACGCCCGGCGAGCGCCAGCCG
CTGGCAGCAGATATGACCATCCCCGAAGGCGACATTGACCTCGAAGGATACCTGGAAACGATCGAACGCCAGACCATCGA
AAAGGCCCTGGAAGCAACGCGATGGAACAAAACGGCGGCTGCCAAGAAGCTGGGAATCACCTTTCGGGCGCTGCGCTATC
GGCTGAAAAAACTGGGCATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (418-458)

• Sigma-54 interaction domain (Sigma54_activat) (139-305)

• Response regulator receiver domain (Response_reg) (8-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	64.114	99.132	0.636
pilR	Acinetobacter baumannii strain A118	51.94	100	0.523
luxO	Vibrio cholerae strain A1552	37.611	98.048	0.369