Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BN424_RS00040 Genome accession   NC_019425
Coordinates   10030..10581 (+) Length   183 a.a.
NCBI ID   WP_010052330.1    Uniprot ID   K8E172
Organism   Carnobacterium maltaromaticum LMA28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5030..15581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN424_RS00030 (BN424_6) gyrA 6888..9437 (+) 2550 WP_015075095.1 DNA gyrase subunit A -
  BN424_RS00035 (BN424_7) rpsF 9680..9979 (+) 300 WP_010052328.1 30S ribosomal protein S6 -
  BN424_RS00040 (BN424_8) ssb 10030..10581 (+) 552 WP_010052330.1 single-stranded DNA-binding protein Machinery gene
  BN424_RS00045 (BN424_9) rpsR 10611..10847 (+) 237 WP_010052333.1 30S ribosomal protein S18 -
  BN424_RS00050 (BN424_10) - 11079..13082 (+) 2004 WP_015075096.1 DHH family phosphoesterase -
  BN424_RS00055 (BN424_11) rplI 13083..13538 (+) 456 WP_010052338.1 50S ribosomal protein L9 -
  BN424_RS17270 (BN424_12) - 13667..14718 (-) 1052 Protein_11 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20090.66 Da        Isoelectric Point: 5.2339

>NTDB_id=54399 BN424_RS00040 WP_010052330.1 10030..10581(+) (ssb) [Carnobacterium maltaromaticum LMA28]
MINRVVLVGRLTKDADLRYTSSGTAVASFTVAVNRQFTNQSGEREADFINCVAWRKTAETLANFTRKGSLVGVEGRIQTR
SYDNQQGQRVYVTEVVVDTFSMLESKSTNEQRQSHDTSGSNGGATSPSKPSQQSGGYQQNSYNSNANNQSSAPQQQYQNS
NRNEDPFASSGQPIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=54399 BN424_RS00040 WP_010052330.1 10030..10581(+) (ssb) [Carnobacterium maltaromaticum LMA28]
ATGATTAACAGAGTTGTTTTAGTTGGAAGATTAACAAAAGATGCAGATTTACGATATACTTCTAGTGGTACAGCCGTTGC
TTCTTTTACTGTGGCAGTCAATAGACAGTTTACAAACCAGAGTGGGGAACGCGAAGCTGATTTTATCAACTGTGTAGCAT
GGAGAAAAACTGCTGAAACACTTGCTAATTTTACACGCAAAGGGTCTTTAGTTGGAGTGGAAGGTCGTATTCAAACACGG
TCTTACGATAACCAACAAGGGCAACGTGTTTATGTTACTGAGGTGGTTGTTGATACGTTCTCAATGCTTGAGTCAAAATC
AACAAATGAGCAACGTCAAAGTCATGATACAAGTGGTAGTAATGGTGGGGCAACTAGTCCTTCTAAACCTTCACAACAAT
CAGGCGGCTATCAACAAAATTCTTATAACAGCAACGCAAATAATCAATCTTCAGCTCCTCAACAACAATATCAAAATTCC
AATCGGAATGAGGATCCATTTGCTTCAAGTGGACAACCTATTGATATCTCAGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K8E172

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63.441

100

0.645
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.738

100

0.557
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

57.923

0.377

Multiple sequence alignment