Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   SDSE_RS14765 Genome accession   NC_019042
Coordinates   835502..836731 (+) Length   409 a.a.
NCBI ID   WP_003054192.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis AC-2713     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 830502..841731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDSE_RS14740 (S_dysgal_equisimilis_AC2713_879) - 831124..832401 (-) 1278 WP_015057516.1 hydroxymethylglutaryl-CoA reductase, degradative -
  SDSE_RS14745 (S_dysgal_equisimilis_AC2713_880) - 832382..833563 (-) 1182 WP_015057517.1 hydroxymethylglutaryl-CoA synthase -
  SDSE_RS14750 (S_dysgal_equisimilis_AC2713_881) - 833781..834620 (+) 840 WP_003054196.1 thymidylate synthase -
  SDSE_RS14755 (S_dysgal_equisimilis_AC2713_882) - 834701..835198 (+) 498 WP_003054187.1 dihydrofolate reductase -
  SDSE_RS21670 (S_dysgal_equisimilis_AC2713_883) - 835218..835388 (+) 171 WP_003054200.1 hypothetical protein -
  SDSE_RS14765 (S_dysgal_equisimilis_AC2713_884) clpX 835502..836731 (+) 1230 WP_003054192.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  SDSE_RS14770 (S_dysgal_equisimilis_AC2713_885) yihA 836741..837340 (+) 600 WP_003061604.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  SDSE_RS14775 (S_dysgal_equisimilis_AC2713_886) - 837484..838227 (+) 744 WP_012766851.1 hypothetical protein -
  SDSE_RS14780 (S_dysgal_equisimilis_AC2713_887) clpC 838284..840383 (-) 2100 WP_015057518.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  SDSE_RS21405 - 840656..841518 (-) 863 Protein_786 IS982 family transposase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45060.54 Da        Isoelectric Point: 4.5866

>NTDB_id=54305 SDSE_RS14765 WP_003054192.1 835502..836731(+) (clpX) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
MAGNRTNDIKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEVLNQYVVGQDR
AKRALSVAVYNHYKRVSFTESRDDEDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEDIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLNTSDLIQI
LTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKAIERKTGARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAAVEG
KSKPVLETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=54305 SDSE_RS14765 WP_003054192.1 835502..836731(+) (clpX) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
ATGGCAGGAAATCGTACAAACGATATTAAAGTATATTGCTCATTTTGTGGTAAGAGCCAAGACGAAGTCAAAAAAATTAT
TGCAGGGAATAATGTTTTTATCTGTAATGAATGTGTGGCTTTGTCACAAGAAATTATTAAAGAAGAGTTGGCAGAAGAAG
TGTTAGCTGACCTAACAGAAGTTCCAAAACCAAAAGAACTCCTTGAGGTTTTAAACCAGTATGTTGTTGGTCAAGATCGT
GCCAAACGTGCTTTATCAGTAGCTGTTTACAATCATTACAAACGCGTGTCATTCACGGAAAGTCGTGATGATGAAGATGT
TGAATTGCAAAAATCAAACATTTTAATGATTGGTCCAACAGGTTCAGGAAAGACTTTTCTCGCTCAAACCTTAGCTAAGA
GCTTAAATGTTCCTTTTGCGATTGCTGATGCAACCTCACTGACTGAAGCAGGGTATGTTGGAGAAGATGTGGAAAATATT
CTTCTCAAGCTTATCCAAGCAGCTGATTATAATGTGGAACGAGCAGAGCGTGGTATCATCTATGTCGATGAAATTGATAA
GATTGCTAAAAAAGGTGAAAATGTGTCCATCACACGTGATGTTTCTGGTGAGGGAGTTCAACAGGCCTTGCTAAAAATCA
TTGAAGGAACGGTTGCTAGTGTTCCTCCTCAAGGCGGTCGTAAGCATCCAAATCAGGAAATGATTCAAATTGATACCAAG
AATATCTTGTTTATTGTTGGGGGAGCCTTTGATGGCATTGAAGACATTGTCAAACAACGTTTAGGAGAAAAAGTCATTGG
TTTTGGTCAAAACAGCCGAAAAATCGATGACAATGCTTCTTATATGCAAGAGATTATTTCAGAAGATATCCAAAAATTTG
GTCTTATCCCAGAGTTTATTGGACGCTTGCCAGTCGTAGCTGCTCTTGAACAACTAAACACATCAGATTTGATTCAAATT
TTGACGGAACCAAGAAATGCCCTAGTCAAGCAATATCAGGCTCTTCTTTCTTACGATGGTGTCGAATTGGCATTTGATAA
GGAAGCCTTAGAAGCCATTGCAAATAAAGCCATTGAGCGTAAGACAGGCGCGCGTGGTCTTCGTTCTATTATCGAAGAAA
CGATGTTAGACATTATGTTTGAAATTCCAAGCCAAGAAGATGTCACAAAAGTGCGTATCACCAAGGCTGCTGTCGAAGGC
AAGTCAAAACCCGTTTTAGAGACAGCTTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

89.487

100

0.895
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.853

98.044

0.577

Multiple sequence alignment