Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | JTZ62_RS07800 | Genome accession | NZ_CP071138 |
| Coordinates | 1517983..1518885 (+) | Length | 300 a.a. |
| NCBI ID | WP_058611612.1 | Uniprot ID | - |
| Organism | Mammaliicoccus sciuri strain SSC-7107 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1512983..1523885
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JTZ62_RS07760 (JTZ62_07760) | - | 1513067..1513621 (+) | 555 | WP_058611616.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| JTZ62_RS07765 (JTZ62_07765) | - | 1513622..1515070 (+) | 1449 | WP_058611615.1 | rhomboid family intramembrane serine protease | - |
| JTZ62_RS07770 (JTZ62_07770) | - | 1515075..1515266 (+) | 192 | WP_078099923.1 | YqgQ family protein | - |
| JTZ62_RS07775 (JTZ62_07775) | - | 1515263..1516234 (+) | 972 | WP_025904167.1 | ROK family glucokinase | - |
| JTZ62_RS07780 (JTZ62_07780) | - | 1516234..1516548 (+) | 315 | WP_058611614.1 | MTH1187 family thiamine-binding protein | - |
| JTZ62_RS07785 (JTZ62_07785) | - | 1516578..1516817 (-) | 240 | WP_016911885.1 | DUF2759 domain-containing protein | - |
| JTZ62_RS07790 (JTZ62_07790) | - | 1516915..1517547 (+) | 633 | WP_058611613.1 | MBL fold metallo-hydrolase | - |
| JTZ62_RS07795 (JTZ62_07795) | - | 1517581..1517829 (-) | 249 | WP_025904960.1 | DUF2626 family protein | - |
| JTZ62_RS07800 (JTZ62_07800) | comGA | 1517983..1518885 (+) | 903 | WP_058611612.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| JTZ62_RS07805 (JTZ62_07805) | comGB | 1518875..1519915 (+) | 1041 | WP_077152202.1 | competence type IV pilus assembly protein ComGB | - |
| JTZ62_RS07810 (JTZ62_07810) | comGC | 1519930..1520247 (+) | 318 | WP_058611611.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| JTZ62_RS07815 (JTZ62_07815) | comGD | 1520228..1520674 (+) | 447 | WP_227531649.1 | competence type IV pilus minor pilin ComGD | - |
| JTZ62_RS07820 (JTZ62_07820) | comGE | 1520658..1520939 (+) | 282 | WP_058611610.1 | competence type IV pilus minor pilin ComGE | - |
| JTZ62_RS07825 (JTZ62_07825) | - | 1520914..1521348 (+) | 435 | WP_049318781.1 | competence type IV pilus minor pilin ComGF | - |
| JTZ62_RS07830 (JTZ62_07830) | - | 1521583..1522071 (+) | 489 | WP_058611609.1 | shikimate kinase | - |
| JTZ62_RS07835 (JTZ62_07835) | gcvT | 1522264..1523352 (+) | 1089 | WP_206543506.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 300 a.a. Molecular weight: 34405.30 Da Isoelectric Point: 6.1198
>NTDB_id=542998 JTZ62_RS07800 WP_058611612.1 1517983..1518885(+) (comGA) [Mammaliicoccus sciuri strain SSC-7107]
MEKLFKSIINDAVNSNASDIHFVPLNDDKVFVQMRINGDNIPYDLDLDFNLYSRLLIYMKFIAHLDVSERNKAQSGQYLF
EHDIHYYLRISTIPISLGIESSSIRITPQHFNHSQVKSEHQSYNVLQNRMYQSEGLFLFTGPTGSGKTTLMYELMYALKR
EKNKHIITIEDPVEQTLNGIVQVSVNEKANITYQQSFKAILRCDPDVIMIGEIRDDITAKQVIQASLSGHLVLSTMHASD
TIGAIHRLVELGVTVEQIKQGISCITNQRLVKKCDEARTLDMSYIFKDDIIKYMENDYET
MEKLFKSIINDAVNSNASDIHFVPLNDDKVFVQMRINGDNIPYDLDLDFNLYSRLLIYMKFIAHLDVSERNKAQSGQYLF
EHDIHYYLRISTIPISLGIESSSIRITPQHFNHSQVKSEHQSYNVLQNRMYQSEGLFLFTGPTGSGKTTLMYELMYALKR
EKNKHIITIEDPVEQTLNGIVQVSVNEKANITYQQSFKAILRCDPDVIMIGEIRDDITAKQVIQASLSGHLVLSTMHASD
TIGAIHRLVELGVTVEQIKQGISCITNQRLVKKCDEARTLDMSYIFKDDIIKYMENDYET
Nucleotide
Download Length: 903 bp
>NTDB_id=542998 JTZ62_RS07800 WP_058611612.1 1517983..1518885(+) (comGA) [Mammaliicoccus sciuri strain SSC-7107]
ATGGAGAAATTATTTAAGTCAATTATTAACGATGCTGTCAATTCTAATGCGAGTGATATTCATTTTGTACCTTTAAACGA
TGATAAAGTCTTTGTCCAAATGAGGATAAATGGCGATAATATACCTTATGATTTAGATTTAGACTTTAATTTGTATAGTA
GGCTACTTATTTATATGAAATTTATCGCTCATCTAGATGTAAGTGAACGAAATAAAGCACAAAGTGGTCAATATTTATTT
GAACATGACATACATTACTATTTAAGAATTTCCACGATACCTATCAGTTTAGGGATAGAATCTAGTTCCATTAGAATAAC
CCCTCAACATTTTAATCATTCACAAGTGAAATCAGAGCATCAATCATATAACGTTCTACAAAACAGAATGTATCAATCAG
AAGGGCTATTTTTATTTACGGGTCCAACTGGATCAGGTAAGACTACATTAATGTATGAACTTATGTACGCATTAAAGAGA
GAGAAGAATAAACATATTATTACGATTGAAGACCCTGTAGAACAAACGTTAAATGGCATCGTTCAAGTTTCAGTCAATGA
AAAAGCTAACATAACTTATCAACAATCCTTTAAAGCCATTTTAAGATGTGATCCGGACGTTATTATGATTGGAGAGATAA
GAGATGATATTACTGCTAAGCAAGTTATTCAAGCTAGTTTAAGTGGTCATTTAGTACTTTCAACAATGCATGCGAGTGAT
ACAATCGGGGCAATCCACCGACTAGTTGAGCTAGGTGTAACAGTCGAACAAATTAAACAAGGTATTTCATGTATTACGAA
CCAACGTCTTGTGAAGAAATGTGATGAAGCAAGAACATTAGATATGTCCTATATTTTTAAAGATGACATTATTAAATATA
TGGAGAATGATTATGAAACGTAA
ATGGAGAAATTATTTAAGTCAATTATTAACGATGCTGTCAATTCTAATGCGAGTGATATTCATTTTGTACCTTTAAACGA
TGATAAAGTCTTTGTCCAAATGAGGATAAATGGCGATAATATACCTTATGATTTAGATTTAGACTTTAATTTGTATAGTA
GGCTACTTATTTATATGAAATTTATCGCTCATCTAGATGTAAGTGAACGAAATAAAGCACAAAGTGGTCAATATTTATTT
GAACATGACATACATTACTATTTAAGAATTTCCACGATACCTATCAGTTTAGGGATAGAATCTAGTTCCATTAGAATAAC
CCCTCAACATTTTAATCATTCACAAGTGAAATCAGAGCATCAATCATATAACGTTCTACAAAACAGAATGTATCAATCAG
AAGGGCTATTTTTATTTACGGGTCCAACTGGATCAGGTAAGACTACATTAATGTATGAACTTATGTACGCATTAAAGAGA
GAGAAGAATAAACATATTATTACGATTGAAGACCCTGTAGAACAAACGTTAAATGGCATCGTTCAAGTTTCAGTCAATGA
AAAAGCTAACATAACTTATCAACAATCCTTTAAAGCCATTTTAAGATGTGATCCGGACGTTATTATGATTGGAGAGATAA
GAGATGATATTACTGCTAAGCAAGTTATTCAAGCTAGTTTAAGTGGTCATTTAGTACTTTCAACAATGCATGCGAGTGAT
ACAATCGGGGCAATCCACCGACTAGTTGAGCTAGGTGTAACAGTCGAACAAATTAAACAAGGTATTTCATGTATTACGAA
CCAACGTCTTGTGAAGAAATGTGATGAAGCAAGAACATTAGATATGTCCTATATTTTTAAAGATGACATTATTAAATATA
TGGAGAATGATTATGAAACGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
52.143 |
93.333 |
0.487 |
| comGA | Staphylococcus aureus N315 |
52.143 |
93.333 |
0.487 |
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
40.58 |
92 |
0.373 |
| pilB | Haemophilus influenzae Rd KW20 |
35.032 |
100 |
0.367 |