Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   SDSE_RS13300 Genome accession   NC_019042
Coordinates   516503..517504 (+) Length   333 a.a.
NCBI ID   WP_015057393.1    Uniprot ID   A0AB33R6J1
Organism   Streptococcus dysgalactiae subsp. equisimilis AC-2713     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 511503..522504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDSE_RS13275 (S_dysgal_equisimilis_AC2713_579) - 511549..512475 (-) 927 WP_003053920.1 glycosyltransferase family 2 protein -
  SDSE_RS13280 (S_dysgal_equisimilis_AC2713_580) - 512612..513802 (-) 1191 WP_003053912.1 DNA/RNA non-specific endonuclease -
  SDSE_RS13285 (S_dysgal_equisimilis_AC2713_581) - 514148..514525 (-) 378 WP_003049924.1 VOC family protein -
  SDSE_RS13290 (S_dysgal_equisimilis_AC2713_582) - 514535..515200 (-) 666 WP_003058626.1 NAD(P)H-dependent oxidoreductase -
  SDSE_RS13295 (S_dysgal_equisimilis_AC2713_583) - 515244..516329 (-) 1086 WP_003058632.1 Xaa-Pro peptidase family protein -
  SDSE_RS13300 (S_dysgal_equisimilis_AC2713_584) ccpA 516503..517504 (+) 1002 WP_015057393.1 catabolite control protein A Regulator
  SDSE_RS13305 (S_dysgal_equisimilis_AC2713_585) - 517658..519121 (+) 1464 WP_015057394.1 alpha-amylase -
  SDSE_RS13310 (S_dysgal_equisimilis_AC2713_586) - 519198..520196 (+) 999 WP_003058618.1 glycosyltransferase -
  SDSE_RS13315 (S_dysgal_equisimilis_AC2713_587) - 520198..521532 (+) 1335 WP_003058623.1 glycosyltransferase family 4 protein -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36711.76 Da        Isoelectric Point: 5.7248

>NTDB_id=54296 SDSE_RS13300 WP_015057393.1 516503..517504(+) (ccpA) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILAKGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPIVLAGTVDLDHQLPS
VNIDYRAAVSNVVDILAENHQSIAFVSGPLIDDINGKVRLAGYKEGLKHNKLDFKEGLVFEANYSYKEGFELAQRVINSG
ATAAYVAEDELAAGLLNGLFEAGKRVPEDFEIITSNDSPVVQYTRPNLSSISQPVYDLGAVSMRMLTKIMNKEELEEKEI
LLNHGIKKRGTTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=54296 SDSE_RS13300 WP_015057393.1 516503..517504(+) (ccpA) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
ATGAATACAGATGATACCATCACGATTTATGACGTTGCCCGTGAAGCTGGTGTTTCTATGGCAACTGTTAGTCGTGTTGT
TAATGGCAATAAAAACGTTAAGGAAAACACGCGTAAGAAAGTTTTAGAAGTCATTGACCGCCTAGATTATCGTCCAAATG
CTGTCGCACGTGGTCTCGCCAGCAAAAAAACAACAACCGTCGGGGTTGTGATTCCGAATATTGCAAACAGTTATTTTTCT
ATTTTAGCCAAAGGTATTGATGATATCGCCGCTATGTATAAATATAATATTGTACTTGCCTCTAGTGATGAGGATGATGA
CAAGGAGGTTAACGTTGTTAATACCCTCTTTGCTAAGCAAGTTGACGGTATTATCTTTATGGGGCACCACTTGACTGAAA
AAATCCGTGCGGAATTTTCACGCTCACGCACCCCGATTGTTTTAGCAGGGACAGTTGACCTTGATCATCAATTACCAAGT
GTTAATATTGACTATAGGGCAGCTGTGTCTAATGTGGTTGATATTTTAGCAGAAAACCATCAGAGCATTGCCTTTGTGTC
AGGACCACTTATTGATGACATCAATGGTAAAGTACGTTTGGCGGGTTACAAAGAAGGCTTGAAGCACAACAAACTTGACT
TCAAAGAAGGACTTGTTTTTGAAGCTAACTATTCTTATAAAGAAGGTTTTGAATTGGCACAACGTGTGATTAACTCAGGA
GCAACAGCAGCTTATGTGGCTGAAGATGAGTTAGCAGCGGGTCTTTTAAATGGTTTGTTTGAAGCAGGCAAACGCGTTCC
AGAAGATTTTGAAATCATCACAAGCAATGATTCACCAGTTGTTCAATATACCCGTCCAAACTTGAGTTCTATCAGCCAAC
CCGTTTACGACTTGGGAGCTGTCAGCATGCGGATGTTGACTAAAATCATGAACAAAGAAGAGTTGGAAGAAAAAGAAATT
CTTTTGAATCATGGTATTAAAAAACGCGGAACCACTAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

77.477

100

0.775

  ccpA Streptococcus pneumoniae D39

75.676

100

0.757

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.589

99.399

0.553


Multiple sequence alignment