Detailed information NTG0542594

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: JY500_RS16260
• Genome accession: NZ_CP071060
• Coordinates: 3578200..3579582 (-)
• Length: 460 a.a.
• NCBI ID: WP_206253819.1
• Uniprot ID: -
• Organism: Niveibacterium microcysteis strain HC41
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3573200..3584582

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JY500_RS16250 (JY500_16250)	-	3574493..3577348 (-)	2856	WP_206253818.1	ribonucleoside-diphosphate reductase subunit alpha	-
JY500_RS16255 (JY500_16255)	ampD	3577594..3578124 (-)	531	WP_206256520.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
JY500_RS16260 (JY500_16260)	pilR	3578200..3579582 (-)	1383	WP_206253819.1	sigma-54 dependent transcriptional regulator	Regulator
JY500_RS16265 (JY500_16265)	-	3579579..3581108 (-)	1530	WP_246479656.1	ATP-binding protein	-
JY500_RS16270 (JY500_16270)	-	3581120..3581359 (-)	240	WP_172197042.1	PP0621 family protein	-
JY500_RS16275 (JY500_16275)	-	3581418..3582572 (-)	1155	WP_172197039.1	methionine aminotransferase	-

Sequence

Protein

• Length: 460 a.a.
• Molecular weight: 50511.71 Da
• Isoelectric Point: 5.7319

>NTDB_id=542594 JY500_RS16260 WP_206253819.1 3578200..3579582(-) (pilR) [Niveibacterium microcysteis strain HC41]
MSSASERRSHIDAAVLIVDDEADIRELLELTLLRMGLGADAAGTLADARALLAEHRYKLCLTDMRLPDGDGLTLVREIAQ
HHPELPVAVITAYGSMENAVTALKEGAFDYLSKPVSLEQLRALVKSVFDLPKRASESRPVGASSLTGESPTMLQVRSMIE
RLARSQAPVYISGESGSGKERAARLIHEYGPRAAKPFVAVNCGAIPENLMESEFFGYRKGAFTGADADRDGFFQAANGGT
LFLDEVGDLPLPMQVKLLRAIQEKRVRRVGDTAEQPVDLRIISATHRNLKELVDQGRFRQDLFYRLNVIELRMPALRERR
EDIPALVDALLGRLAQEAGLPVPRVDAAANAALLAYAFPGNVRELENILERALALHGGQCITVEDLHLEPREEEAGPHGI
PGGGVALERESLQDYLDRVERQAINEAIAKTDGNRTAAARLLGVTFRSLRYRMERLGMKE

Nucleotide

• Length: 1383 bp

>NTDB_id=542594 JY500_RS16260 WP_206253819.1 3578200..3579582(-) (pilR) [Niveibacterium microcysteis strain HC41]
ATGAGCAGTGCAAGTGAGCGACGCAGCCACATCGATGCAGCGGTACTGATTGTCGATGACGAGGCGGATATCCGTGAATT
GCTGGAGCTGACGCTTCTGCGCATGGGGCTTGGTGCCGACGCGGCTGGAACGCTGGCCGACGCGCGCGCATTGCTGGCGG
AGCACCGCTACAAGCTGTGCTTGACCGACATGCGCCTGCCGGACGGCGATGGCCTCACACTGGTGCGAGAAATTGCGCAG
CACCATCCAGAACTGCCAGTGGCGGTGATCACGGCCTACGGCAGCATGGAGAACGCAGTCACCGCGTTGAAGGAGGGGGC
CTTCGACTACCTCTCCAAACCCGTTTCGCTTGAACAACTGCGAGCCCTGGTCAAATCGGTCTTCGATCTGCCGAAGCGCG
CGAGTGAATCACGCCCGGTCGGCGCCAGTTCGTTGACCGGCGAGTCGCCCACCATGCTGCAAGTGCGCAGCATGATCGAA
CGTTTGGCGCGCAGTCAGGCGCCGGTCTATATCAGCGGTGAGTCGGGCAGCGGCAAGGAGCGCGCGGCGCGCCTGATTCA
CGAATACGGCCCGCGTGCCGCGAAGCCCTTCGTTGCGGTCAACTGCGGAGCGATTCCCGAAAATCTCATGGAGAGCGAGT
TCTTCGGCTATCGCAAGGGAGCTTTTACCGGCGCGGATGCTGACCGCGATGGCTTCTTCCAGGCAGCCAACGGGGGCACC
TTGTTCCTCGATGAAGTGGGTGACCTGCCGTTGCCCATGCAGGTAAAGCTTCTGCGTGCTATCCAGGAAAAGCGTGTGCG
CCGTGTCGGCGACACGGCCGAGCAGCCGGTGGATCTGCGCATCATCAGCGCGACGCACCGCAATCTGAAGGAGCTCGTGG
ATCAAGGGCGGTTCCGGCAGGATCTGTTCTACCGCCTCAACGTCATTGAACTGCGCATGCCAGCGCTGCGCGAGCGGCGT
GAGGACATCCCGGCCCTGGTCGATGCCTTGCTTGGGCGATTGGCCCAGGAGGCGGGCTTGCCTGTGCCGCGTGTTGACGC
CGCTGCGAACGCCGCCTTGTTGGCCTATGCATTCCCGGGCAACGTGCGCGAACTGGAGAACATTCTTGAACGCGCGTTGG
CCTTGCATGGCGGCCAATGCATTACGGTCGAGGATCTTCACCTCGAACCGCGCGAGGAGGAGGCCGGTCCGCACGGCATT
CCGGGTGGCGGCGTTGCCCTGGAGCGGGAATCCCTGCAGGACTATCTCGACCGCGTCGAGCGCCAGGCCATCAACGAAGC
CATCGCCAAGACCGATGGCAACCGCACGGCCGCGGCGCGGCTTCTGGGCGTGACCTTCCGTTCGCTGCGCTACCGCATGG
AGCGGCTGGGGATGAAGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (416-455)

• Sigma-54 interaction domain (Sigma54_activat) (146-311)

• Response regulator receiver domain (Response_reg) (15-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.459	96.522	0.574
pilR	Acinetobacter baumannii strain A118	45.197	99.565	0.45
luxO	Vibrio cholerae strain A1552	37.194	97.609	0.363