Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JS609_RS16210 Genome accession   NZ_CP071043
Coordinates   3120532..3121176 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis isolate ELA2001105     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3115532..3126176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS16175 (JS609_03186) mrpB 3116724..3117155 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  JS609_RS16180 (JS609_03187) mrpC 3117155..3117496 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  JS609_RS16185 (JS609_03188) mrpD 3117489..3118970 (+) 1482 WP_213414935.1 Na+/H+ antiporter subunit D -
  JS609_RS16190 (JS609_03189) mrpE 3118976..3119452 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  JS609_RS16195 (JS609_03190) mrpF 3119452..3119736 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  JS609_RS16200 (JS609_03191) mnhG 3119720..3120094 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  JS609_RS16205 (JS609_03192) yuxO 3120133..3120513 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  JS609_RS16210 (JS609_03193) comA 3120532..3121176 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  JS609_RS16215 (JS609_03194) comP 3121257..3123554 (-) 2298 WP_153912412.1 histidine kinase Regulator
  JS609_RS16220 (JS609_03195) comX 3123562..3123723 (-) 162 WP_049140565.1 competence pheromone ComX -
  JS609_RS16225 (JS609_03196) - 3123738..3124598 (-) 861 WP_040081966.1 polyprenyl synthetase family protein -
  JS609_RS16230 (JS609_03197) degQ 3124783..3124923 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  JS609_RS16235 - 3125145..3125270 (+) 126 WP_121549029.1 hypothetical protein -
  JS609_RS16240 (JS609_03198) - 3125384..3125752 (+) 369 WP_213414936.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=542537 JS609_RS16210 WP_003220716.1 3120532..3121176(-) (comA) [Bacillus subtilis isolate ELA2001105]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=542537 JS609_RS16210 WP_003220716.1 3120532..3121176(-) (comA) [Bacillus subtilis isolate ELA2001105]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1