Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JS608_RS17670 Genome accession   NZ_CP071042
Coordinates   3554996..3555640 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3549996..3560640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS17635 (JS608_03529) - 3551181..3551612 (+) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -
  JS608_RS17640 (JS608_03530) - 3551612..3551953 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  JS608_RS17645 (JS608_03531) - 3551946..3553427 (+) 1482 WP_043867375.1 Na+/H+ antiporter subunit D -
  JS608_RS17650 (JS608_03532) - 3553433..3553909 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  JS608_RS17655 (JS608_03533) - 3553909..3554193 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  JS608_RS17660 (JS608_03534) mnhG 3554177..3554551 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  JS608_RS17665 (JS608_03535) - 3554591..3554974 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  JS608_RS17670 (JS608_03536) comA 3554996..3555640 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  JS608_RS17675 (JS608_03537) comP 3555721..3558027 (-) 2307 WP_044052948.1 sensor histidine kinase Regulator
  JS608_RS17680 (JS608_03538) comX 3558046..3558222 (-) 177 WP_044052947.1 competence pheromone ComX -
  JS608_RS17685 (JS608_03539) - 3558237..3559112 (-) 876 WP_026092320.1 polyprenyl synthetase family protein -
  JS608_RS17690 (JS608_03540) degQ 3559264..3559404 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  JS608_RS17695 (JS608_03542) - 3559870..3560211 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=542465 JS608_RS17670 WP_003152052.1 3554996..3555640(-) (comA) [Bacillus amyloliquefaciens isolate ELA1901024]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=542465 JS608_RS17670 WP_003152052.1 3554996..3555640(-) (comA) [Bacillus amyloliquefaciens isolate ELA1901024]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864