Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   JS608_RS14785 Genome accession   NZ_CP071042
Coordinates   3010702..3011037 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3005702..3016037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS14765 (JS608_02955) gcvT 3006313..3007413 (-) 1101 WP_058906182.1 glycine cleavage system aminomethyltransferase GcvT -
  JS608_RS14770 (JS608_02956) - 3007836..3009506 (+) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  JS608_RS14775 (JS608_02957) - 3009524..3010318 (+) 795 WP_014305407.1 YqhG family protein -
  JS608_RS14780 (JS608_02958) sinI 3010495..3010668 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  JS608_RS14785 (JS608_02959) sinR 3010702..3011037 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  JS608_RS14790 (JS608_02960) tasA 3011085..3011870 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  JS608_RS14795 (JS608_02961) sipW 3011934..3012518 (-) 585 WP_003153100.1 signal peptidase I SipW -
  JS608_RS14800 (JS608_02962) tapA 3012490..3013161 (-) 672 WP_003153099.1 amyloid fiber anchoring/assembly protein TapA -
  JS608_RS14805 (JS608_02963) - 3013420..3013749 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  JS608_RS14810 (JS608_02964) - 3013789..3013968 (-) 180 WP_003153093.1 YqzE family protein -
  JS608_RS14815 (JS608_02965) comGG 3014025..3014402 (-) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  JS608_RS14820 (JS608_02966) comGF 3014403..3014903 (-) 501 WP_223203779.1 competence type IV pilus minor pilin ComGF -
  JS608_RS14825 (JS608_02967) comGE 3014812..3015126 (-) 315 WP_003153089.1 competence type IV pilus minor pilin ComGE -
  JS608_RS14830 (JS608_02968) comGD 3015110..3015547 (-) 438 WP_003153088.1 competence type IV pilus minor pilin ComGD Machinery gene
  JS608_RS14835 (JS608_02969) comGC 3015537..3015845 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=542449 JS608_RS14785 WP_003153104.1 3010702..3011037(+) (sinR) [Bacillus amyloliquefaciens isolate ELA1901024]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=542449 JS608_RS14785 WP_003153104.1 3010702..3011037(+) (sinR) [Bacillus amyloliquefaciens isolate ELA1901024]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991