Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   JYG36_RS08430 Genome accession   NZ_CP071007
Coordinates   1785820..1788042 (+) Length   740 a.a.
NCBI ID   WP_213603577.1    Uniprot ID   -
Organism   Pseudomonas sp. SORT22     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1780820..1793042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG36_RS08410 (JYG36_08410) - 1782680..1783303 (+) 624 WP_093380561.1 glutathione S-transferase -
  JYG36_RS08415 (JYG36_08415) - 1783458..1784390 (+) 933 WP_213603574.1 ABC transporter ATP-binding protein -
  JYG36_RS08420 (JYG36_08420) - 1784387..1785166 (+) 780 WP_045195195.1 ABC transporter permease -
  JYG36_RS08425 (JYG36_08425) - 1785134..1785676 (-) 543 WP_045195193.1 DUF2062 domain-containing protein -
  JYG36_RS08430 (JYG36_08430) comA 1785820..1788042 (+) 2223 WP_213603577.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JYG36_RS08435 (JYG36_08435) exbB 1788113..1788748 (+) 636 WP_176794233.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JYG36_RS08440 (JYG36_08440) - 1788745..1789176 (+) 432 WP_045195189.1 biopolymer transporter ExbD -
  JYG36_RS08445 (JYG36_08445) lpxK 1789176..1790186 (+) 1011 WP_093380565.1 tetraacyldisaccharide 4'-kinase -
  JYG36_RS08450 (JYG36_08450) - 1790225..1790410 (+) 186 WP_038994143.1 Trm112 family protein -
  JYG36_RS08455 (JYG36_08455) kdsB 1790407..1791171 (+) 765 WP_045195184.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JYG36_RS08460 (JYG36_08460) - 1791171..1791635 (+) 465 WP_045195182.1 low molecular weight protein-tyrosine-phosphatase -
  JYG36_RS08465 (JYG36_08465) murB 1791632..1792651 (+) 1020 WP_213603579.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80879.92 Da        Isoelectric Point: 9.6934

>NTDB_id=542169 JYG36_RS08430 WP_213603577.1 1785820..1788042(+) (comA) [Pseudomonas sp. SORT22]
MRTGMLALALGLLSLGFLPALPPVWILVLLAIAGLCCLPTRLWPAGLFLLGLSWACVSAQWALDERLAAQFDGRTLWIEG
RVTGLPEQGARSVRFELSDAESRRGQLPRRMQLSWFGGPAVNSGEYWRLAVSLKRPAGLLNPHGPDQEANLLARRIGATG
SVKAGERLLPATAAWRDDLRQRLLSVDAQGREAALVALILGDGGALARQDWQALQATGTVHLLVISGQHIGLLAGLVYAL
IAGLARLGWWPQRLPWLPWACALAFAAALAYGLLAGFQVPVQRACMMLAMVLLWRLRFRHLGVGLPLLLALDAVLLWEPL
ASLQPGFWLSFMAVAILIFTFSGRLGAWNPWLAWSRAQWLIAIGLLPVLLAQGLPVSLTAPLINLLAVPWISLAVLPMAL
LGTVLLPVPLLGEGLLWLAGGLLDGLFRLLAHVAIWQPAWIPEPLPFWAWLLVCLGALLVLLPRGIPMRVLGWPLLLLAV
FAPRERVPQGQVEVWQLDVGQGLAFVLRTRHHAMLYDAGPAMGDFDLGERVVLPSLRKLGVSKLDLMLLSHADADHAGGA
RAVQRGLPVLRVQAGEAAALPEVLQAQPCSSGERWQWDGVNFSLWQWQDAGDSNQDSCVLLVEANGEKLLLTGDLDARGE
RAWARGWQATTVDWLQSPHHGSRSSSSEALLKAATPRGVLISRGRYNAFGHPHPEVMARYRTHGIQAYDNVDHGALRLRL
GVFGEPEGLRAQRRFWREPR

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=542169 JYG36_RS08430 WP_213603577.1 1785820..1788042(+) (comA) [Pseudomonas sp. SORT22]
ATGCGCACAGGGATGTTGGCGCTTGCACTCGGGCTGCTCAGCCTCGGGTTCCTGCCGGCTTTGCCGCCCGTCTGGATACT
TGTCCTGCTGGCAATTGCCGGGCTTTGCTGCCTGCCTACGCGGCTGTGGCCCGCCGGGCTGTTTCTGCTGGGCTTGAGCT
GGGCCTGTGTCTCGGCGCAATGGGCGTTGGATGAGCGCCTGGCGGCGCAGTTCGATGGCCGTACCCTGTGGATAGAGGGC
CGGGTTACTGGTTTGCCGGAGCAGGGTGCGCGCTCGGTGAGGTTCGAGTTGAGCGATGCCGAGTCGCGCCGGGGGCAATT
GCCAAGGCGCATGCAGCTCAGCTGGTTCGGCGGCCCGGCGGTCAATAGCGGTGAATACTGGCGTTTGGCAGTCAGCCTCA
AGCGCCCCGCAGGTTTGCTCAATCCTCACGGCCCGGACCAGGAGGCCAACCTGTTGGCCCGGCGCATCGGCGCCACCGGC
AGCGTCAAGGCCGGCGAGCGGCTGCTGCCGGCAACGGCGGCCTGGCGGGATGATCTGCGCCAGCGCTTGCTCAGCGTTGA
TGCCCAGGGCCGGGAGGCGGCGCTGGTGGCCTTGATACTCGGCGATGGCGGCGCTTTGGCGCGCCAGGACTGGCAAGCGC
TGCAGGCCACCGGCACGGTGCACTTGCTGGTGATTTCCGGCCAGCATATTGGCCTGTTGGCCGGGCTGGTATACGCCTTG
ATTGCCGGGCTGGCGCGCCTGGGCTGGTGGCCGCAACGGCTACCCTGGCTGCCTTGGGCCTGTGCGCTGGCCTTTGCCGC
AGCACTGGCCTATGGCTTGCTGGCCGGGTTTCAGGTGCCGGTGCAGCGCGCCTGCATGATGCTGGCCATGGTGCTGCTCT
GGCGCCTGCGCTTTCGTCACCTGGGTGTCGGGCTGCCGTTGTTGCTGGCGCTCGATGCAGTGCTGCTGTGGGAACCATTG
GCCAGCTTGCAGCCGGGCTTCTGGCTGTCGTTCATGGCCGTGGCCATTCTGATCTTCACCTTCAGCGGCCGCCTTGGCGC
CTGGAACCCCTGGCTGGCCTGGAGTCGCGCCCAGTGGTTGATCGCCATCGGCTTGCTGCCGGTGCTGCTGGCGCAAGGTT
TGCCGGTGAGCCTGACGGCGCCGCTGATCAATCTGCTGGCAGTGCCGTGGATCAGCCTTGCGGTGTTGCCAATGGCGTTG
CTCGGCACTGTGTTGCTGCCGGTGCCGCTTCTGGGGGAAGGCTTGCTGTGGCTTGCCGGCGGCCTGCTCGACGGTTTGTT
TCGCTTGCTGGCGCATGTGGCGATTTGGCAACCGGCCTGGATCCCAGAACCATTGCCGTTCTGGGCCTGGTTGCTGGTGT
GCCTGGGGGCATTGCTGGTGTTGTTGCCGCGTGGCATACCGATGCGGGTGCTGGGCTGGCCATTGTTGCTGTTGGCGGTG
TTTGCGCCCCGAGAGCGCGTGCCGCAGGGGCAGGTAGAGGTCTGGCAGCTGGATGTCGGCCAGGGGCTGGCCTTTGTGCT
GCGCACCCGGCACCACGCCATGTTGTATGACGCCGGCCCGGCCATGGGCGATTTCGATCTGGGCGAGCGGGTAGTGCTTC
CCAGCTTGCGCAAGCTGGGGGTAAGCAAGCTCGACCTGATGTTGCTCAGCCACGCCGACGCCGATCACGCCGGGGGCGCC
CGCGCCGTGCAGCGCGGGTTGCCGGTGCTGCGGGTGCAGGCTGGTGAGGCTGCGGCCTTGCCTGAAGTGCTGCAAGCGCA
GCCGTGCAGCAGCGGCGAACGCTGGCAGTGGGACGGGGTGAATTTTTCACTGTGGCAGTGGCAGGATGCTGGCGACAGCA
ACCAGGATTCCTGTGTGCTGCTGGTCGAGGCAAACGGCGAAAAACTGCTGCTCACCGGCGATCTCGATGCCCGTGGCGAA
CGGGCCTGGGCGCGGGGCTGGCAGGCGACCACGGTCGACTGGCTGCAATCGCCCCATCACGGCAGTCGCAGCTCCTCCAG
CGAGGCCTTGTTAAAGGCTGCTACCCCGCGCGGCGTGCTGATTTCGCGCGGGCGCTACAACGCCTTCGGGCATCCGCACC
CGGAGGTCATGGCGCGCTATCGGACGCATGGTATCCAGGCCTATGACAATGTCGACCACGGTGCCTTGCGCCTGCGCCTG
GGTGTGTTCGGCGAGCCTGAGGGGTTGCGTGCCCAGCGGCGTTTCTGGCGTGAACCGAGATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Competence protein (Competence)

(198-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.935

98.243

0.599
  comA Ralstonia pseudosolanacearum GMI1000

33.175

100

0.378