Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JYG36_RS08435 Genome accession   NZ_CP071007
Coordinates   1788113..1788748 (+) Length   211 a.a.
NCBI ID   WP_176794233.1    Uniprot ID   -
Organism   Pseudomonas sp. SORT22     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1783113..1793748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG36_RS08415 (JYG36_08415) - 1783458..1784390 (+) 933 WP_213603574.1 ABC transporter ATP-binding protein -
  JYG36_RS08420 (JYG36_08420) - 1784387..1785166 (+) 780 WP_045195195.1 ABC transporter permease -
  JYG36_RS08425 (JYG36_08425) - 1785134..1785676 (-) 543 WP_045195193.1 DUF2062 domain-containing protein -
  JYG36_RS08430 (JYG36_08430) comA 1785820..1788042 (+) 2223 WP_213603577.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JYG36_RS08435 (JYG36_08435) exbB 1788113..1788748 (+) 636 WP_176794233.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JYG36_RS08440 (JYG36_08440) - 1788745..1789176 (+) 432 WP_045195189.1 biopolymer transporter ExbD -
  JYG36_RS08445 (JYG36_08445) lpxK 1789176..1790186 (+) 1011 WP_093380565.1 tetraacyldisaccharide 4'-kinase -
  JYG36_RS08450 (JYG36_08450) - 1790225..1790410 (+) 186 WP_038994143.1 Trm112 family protein -
  JYG36_RS08455 (JYG36_08455) kdsB 1790407..1791171 (+) 765 WP_045195184.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JYG36_RS08460 (JYG36_08460) - 1791171..1791635 (+) 465 WP_045195182.1 low molecular weight protein-tyrosine-phosphatase -
  JYG36_RS08465 (JYG36_08465) murB 1791632..1792651 (+) 1020 WP_213603579.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22860.07 Da        Isoelectric Point: 6.8759

>NTDB_id=542170 JYG36_RS08435 WP_176794233.1 1788113..1788748(+) (exbB) [Pseudomonas sp. SORT22]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=542170 JYG36_RS08435 WP_176794233.1 1788113..1788748(+) (exbB) [Pseudomonas sp. SORT22]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCGATCGTCGC
CGAGCGTCTCTGGACCTTGCGCGCCAGCCGGGTTACGCCACCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AACAGCTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAGATCCTTGCCGCAGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAGGAATGCATCGAAGAGGCCGCAGCGCGTGTCATTCACGAGCTGGAGCGCTACAT
CAATGCCCTGGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCTTGCTCGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGTACCGGCATGACCACCAATGCTGCAGTGCTCGCCGGCGGTATCTCCAAGGCACTGATCACCACCGCG
GCCGGCCTGATGGTCGGTATTCCGTCGGTGTTCTTCCACCGTTTCCTGCAGCGTCGTATCGACGAGCTGGTGGTCGGTAT
GGAGCAGGAAGCGATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGTGATGTCGACCTGGCCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853