Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   JYB86_RS05905 Genome accession   NZ_CP070997
Coordinates   1230408..1231112 (-) Length   234 a.a.
NCBI ID   WP_205779658.1    Uniprot ID   -
Organism   Acinetobacter indicus strain LYS68A     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1225408..1236112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB86_RS05880 (JYB86_05880) - 1225522..1226841 (+) 1320 WP_005177019.1 adenylosuccinate synthase -
  JYB86_RS05885 (JYB86_05885) - 1226978..1227763 (+) 786 WP_104469896.1 M48 family metallopeptidase -
  JYB86_RS05890 (JYB86_05890) - 1227852..1228160 (+) 309 WP_205779656.1 hypothetical protein -
  JYB86_RS05895 (JYB86_05895) - 1228323..1229105 (+) 783 WP_205779657.1 M48 family metallopeptidase -
  JYB86_RS05900 (JYB86_05900) - 1229188..1230237 (-) 1050 WP_016658383.1 NADP(H)-dependent aldo-keto reductase -
  JYB86_RS05905 (JYB86_05905) crp 1230408..1231112 (-) 705 WP_205779658.1 cAMP-activated global transcriptional regulator CRP Regulator
  JYB86_RS05910 (JYB86_05910) - 1231260..1231682 (+) 423 WP_005177032.1 OsmC family protein -
  JYB86_RS05915 (JYB86_05915) clpB 1232007..1234586 (+) 2580 WP_168369610.1 ATP-dependent chaperone ClpB -
  JYB86_RS05920 (JYB86_05920) - 1234815..1236098 (+) 1284 WP_168369609.1 DUF945 family protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26357.97 Da        Isoelectric Point: 4.6523

>NTDB_id=542085 JYB86_RS05905 WP_205779658.1 1230408..1231112(-) (crp) [Acinetobacter indicus strain LYS68A]
MTSNFSQLSTDALSPGQLPDSVKALLKRAYINRYPKRTTIVEAGSESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFEVNPQRTAEVRTRDVCEIAEVTYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQNDAADEQFDDE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=542085 JYB86_RS05905 WP_205779658.1 1230408..1231112(-) (crp) [Acinetobacter indicus strain LYS68A]
ATGACTTCAAACTTTTCACAATTAAGCACCGATGCCCTGTCTCCTGGTCAATTACCAGATTCAGTCAAGGCATTATTAAA
ACGTGCATATATCAACCGTTATCCGAAACGGACCACAATTGTTGAGGCGGGGTCTGAATCAAAATCACTTTATTTGATTC
TGAAAGGATCTGTTTCCATCATTCTGCGTGAAGATGATGATCGCGAAATTGTTGTGGCTTATTTGAATCCGGGTGACTTC
TTTGGGGAAATGGGTCTATTTGAAGTAAATCCACAACGTACTGCAGAAGTACGCACACGTGACGTTTGTGAAATTGCCGA
AGTGACTTATGAAAACTTCCACGAGCTCAGCAAGCAATATCCAGATTTAAGCTATGCGGTATTTGCCCAACTGGTGCGCC
GTTTAAAAAATACCACGCGTAAAGTGACCGATCTGGCCTTCATTGATGTTTCAGGCCGTATTGCGCGTTGTCTGATTGAC
CTGTCTGCGCAGCCTGAAGCCATGATTTTGCCAAATGGCCGTCAAATCCGCATTACCCGTCAGGAAATTGGCCGCATTGT
TGGCTGTTCACGTGAAATGGTCGGCCGTGTTCTGAAAACCCTGGAAGAACAAGGCATGATCGAAACTGATGGTAAAGCCA
TTCTGATTTTTGATGCCTCTTTAGAGCAAAATGATGCAGCAGATGAACAGTTTGATGATGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

90.598

100

0.906
  crp Vibrio cholerae strain A1552

46.829

87.607

0.41
  crp Haemophilus influenzae Rd KW20

47.179

83.333

0.393