Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   JYG34_RS07625 Genome accession   NZ_CP070982
Coordinates   1717900..1720104 (+) Length   734 a.a.
NCBI ID   WP_213660145.1    Uniprot ID   -
Organism   Pseudomonas entomophila strain Small     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1712900..1725104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG34_RS07605 (JYG34_07605) - 1714766..1715389 (+) 624 WP_213660141.1 glutathione S-transferase -
  JYG34_RS07610 (JYG34_07610) - 1715523..1716455 (+) 933 WP_213660142.1 ABC transporter ATP-binding protein -
  JYG34_RS07615 (JYG34_07615) - 1716452..1717231 (+) 780 WP_213660143.1 ABC transporter permease -
  JYG34_RS07620 (JYG34_07620) - 1717115..1717756 (-) 642 WP_213660144.1 DUF2062 domain-containing protein -
  JYG34_RS07625 (JYG34_07625) comA 1717900..1720104 (+) 2205 WP_213660145.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JYG34_RS07630 (JYG34_07630) exbB 1720516..1721151 (+) 636 WP_028690976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JYG34_RS07635 (JYG34_07635) - 1721148..1721582 (+) 435 WP_213660146.1 biopolymer transporter ExbD -
  JYG34_RS07640 (JYG34_07640) lpxK 1721582..1722592 (+) 1011 WP_213660147.1 tetraacyldisaccharide 4'-kinase -
  JYG34_RS07645 (JYG34_07645) - 1722627..1722812 (+) 186 WP_011532874.1 Trm112 family protein -
  JYG34_RS07650 (JYG34_07650) kdsB 1722809..1723573 (+) 765 WP_213660148.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JYG34_RS07655 (JYG34_07655) - 1723573..1724037 (+) 465 WP_213660149.1 low molecular weight protein-tyrosine-phosphatase -
  JYG34_RS07660 (JYG34_07660) murB 1724034..1725053 (+) 1020 WP_213660150.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 79955.81 Da        Isoelectric Point: 10.1319

>NTDB_id=541845 JYG34_RS07625 WP_213660145.1 1717900..1720104(+) (comA) [Pseudomonas entomophila strain Small]
MRTGMLALVLGLLCLRFLPALPSVGWLLVLLIFALVCLPTRLWWLGCFVLGACYSCWSAQRALDDRLPVELDGRTLWLEG
KVVGLPARGQRSVRFELEQPRSRRAQLPQRVQLNWFEGPQLRAGERWRLAVNLRQPSGLLNPHGPDREAMLLARRVGATG
TVKAGERLGAAVVDWRDGLRQRLLAVEAHGREAALAALVLGDGAGLARQDWQVLQATGTVHLLVISGQHIGLLAGLVYGL
VAGLARLGWWPHRWPWLPWACGLAMAAALAYGWLAGFGVPVQRACLMLAVMLLWRLRFRHLGATTPLLLALLGVLLVEPL
ASLLPGFWLSFAAVAVLVLCFSARLGAWRPWQAWTRAQWVIAVGLLPVLLALGLPVSLTAPLANLLAVPWISLGVLPLAL
LGTVLLPVPGVGEGGLWLAGLSLDGLFASLALVADQQPAWMPEPAPVWAWLLVCLGAVLVLLPRGVPLRMPGAVMLLAIW
SPREQVPHGQVDVWQLDVGQGLAVLLRTRHHSLLYDAGPAQGDSDLGESVVLPTLRKLGVKNLDVMLISHGHADHAGGAA
AVRRGLPVSRVLAGEVAGLDQAQLCGSGERWIWDGVAFSLWHWPQGRSSNERSCVLQVEANGERLLLAGDMESGAERAWL
AAHEEHRIDWLQAPHHGSRTSSTEPFVKATAPRGVMISRGRHNGFGHPHAQVIERYHRHGVMVHDTAVEGALRLRLGSYF
GVEGVRAQRRFWRD

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=541845 JYG34_RS07625 WP_213660145.1 1717900..1720104(+) (comA) [Pseudomonas entomophila strain Small]
ATGCGCACAGGGATGCTTGCGCTGGTGCTCGGGCTGTTGTGCCTGCGCTTTTTGCCTGCTCTGCCATCGGTCGGATGGCT
GCTGGTCCTGTTGATATTTGCCTTGGTCTGCTTGCCCACGCGCCTGTGGTGGCTGGGGTGTTTCGTGCTGGGCGCGTGTT
ATTCGTGCTGGTCGGCGCAGCGGGCGCTGGACGATCGCTTGCCCGTCGAGCTGGATGGCCGGACGTTGTGGCTGGAGGGG
AAGGTGGTGGGTTTGCCCGCCCGTGGCCAACGCAGCGTGCGTTTCGAGCTGGAGCAGCCAAGATCCCGCCGGGCGCAGTT
ACCGCAACGTGTGCAGTTGAACTGGTTCGAAGGGCCGCAGCTGCGGGCGGGCGAGCGTTGGCGGCTGGCAGTCAATCTGC
GCCAGCCCAGTGGGTTGCTCAACCCCCATGGGCCGGATCGCGAGGCCATGCTTCTGGCGCGGCGGGTTGGTGCAACGGGC
ACCGTCAAGGCGGGCGAGCGGCTTGGCGCGGCGGTGGTCGACTGGCGCGATGGCCTGCGTCAACGCTTGCTGGCGGTGGA
GGCGCACGGGCGCGAGGCGGCTCTTGCAGCCTTGGTGCTGGGCGATGGCGCGGGGCTGGCCCGGCAGGACTGGCAGGTTT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATTTCAGGGCAGCACATCGGGTTGCTGGCTGGGCTGGTGTATGGCCTG
GTGGCGGGGCTGGCACGGCTGGGCTGGTGGCCACACCGGTGGCCATGGTTGCCGTGGGCTTGCGGGCTGGCCATGGCGGC
GGCGTTGGCCTATGGCTGGCTGGCGGGGTTTGGCGTGCCGGTTCAGCGAGCCTGCCTGATGCTCGCCGTGATGCTGCTCT
GGCGCCTGCGCTTCCGCCATCTGGGCGCCACCACGCCGCTGTTGCTGGCGCTGCTCGGCGTGCTGCTGGTCGAACCGCTG
GCCAGCCTATTGCCGGGTTTCTGGCTGTCGTTCGCCGCCGTCGCCGTGCTGGTGCTGTGTTTTTCCGCCCGGCTGGGCGC
ATGGCGCCCCTGGCAAGCCTGGACCCGTGCCCAGTGGGTGATTGCCGTCGGCCTGTTGCCGGTGCTGCTGGCGCTGGGGT
TGCCGGTCAGCCTGACGGCGCCGCTGGCCAATTTGCTGGCGGTGCCGTGGATCAGCCTGGGGGTGCTGCCGCTGGCACTG
CTGGGGACAGTGCTGTTGCCGGTTCCGGGCGTGGGGGAGGGGGGGTTGTGGTTGGCGGGGCTGTCGCTGGACGGTCTGTT
TGCATCGTTGGCGCTCGTCGCAGATCAGCAGCCAGCCTGGATGCCTGAGCCCGCGCCTGTGTGGGCCTGGCTGCTGGTGT
GCCTGGGGGCGGTTCTCGTGCTTTTGCCTCGCGGCGTGCCACTGCGCATGCCGGGCGCGGTCATGTTGCTGGCGATCTGG
TCGCCGCGAGAGCAGGTGCCCCACGGGCAGGTGGACGTCTGGCAACTGGACGTCGGCCAGGGCCTGGCGGTGTTGCTGCG
CACCCGCCATCACAGTTTGCTGTATGACGCGGGGCCCGCGCAGGGCGACAGCGATCTGGGCGAAAGCGTGGTGCTGCCTA
CCTTGCGCAAACTTGGGGTGAAAAACCTCGATGTGATGCTGATCAGCCATGGTCATGCCGACCATGCCGGTGGCGCGGCG
GCCGTTCGTCGCGGGTTGCCGGTGAGCCGGGTGCTGGCGGGAGAGGTCGCCGGGCTGGATCAGGCGCAGCTCTGTGGCAG
TGGTGAGCGCTGGATCTGGGATGGCGTGGCATTTTCGCTCTGGCACTGGCCGCAAGGCCGGTCCAGCAACGAGCGCTCCT
GTGTGTTGCAGGTGGAGGCCAATGGCGAGCGGTTGCTGCTGGCCGGCGATATGGAAAGTGGCGCGGAGCGGGCCTGGCTG
GCAGCTCACGAAGAGCATCGGATCGACTGGCTGCAGGCGCCGCACCATGGCAGCCGCACGTCGTCCACCGAGCCGTTCGT
CAAGGCCACCGCGCCGCGCGGGGTGATGATTTCCCGTGGGCGGCACAATGGCTTCGGGCATCCTCATGCGCAGGTGATCG
AGCGGTATCATCGGCATGGGGTGATGGTGCATGACACGGCGGTCGAGGGGGCGTTGCGGTTGCGACTGGGCAGCTATTTT
GGGGTGGAGGGGGTGCGGGCGCAACGGCGGTTTTGGCGGGATTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-673)

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.889

98.093

0.578
  comA Ralstonia pseudosolanacearum GMI1000

34.866

100

0.372