Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JYG34_RS07630 Genome accession   NZ_CP070982
Coordinates   1720516..1721151 (+) Length   211 a.a.
NCBI ID   WP_028690976.1    Uniprot ID   A0A4Y8SF72
Organism   Pseudomonas entomophila strain Small     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1715516..1726151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG34_RS07610 (JYG34_07610) - 1715523..1716455 (+) 933 WP_213660142.1 ABC transporter ATP-binding protein -
  JYG34_RS07615 (JYG34_07615) - 1716452..1717231 (+) 780 WP_213660143.1 ABC transporter permease -
  JYG34_RS07620 (JYG34_07620) - 1717115..1717756 (-) 642 WP_213660144.1 DUF2062 domain-containing protein -
  JYG34_RS07625 (JYG34_07625) comA 1717900..1720104 (+) 2205 WP_213660145.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JYG34_RS07630 (JYG34_07630) exbB 1720516..1721151 (+) 636 WP_028690976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JYG34_RS07635 (JYG34_07635) - 1721148..1721582 (+) 435 WP_213660146.1 biopolymer transporter ExbD -
  JYG34_RS07640 (JYG34_07640) lpxK 1721582..1722592 (+) 1011 WP_213660147.1 tetraacyldisaccharide 4'-kinase -
  JYG34_RS07645 (JYG34_07645) - 1722627..1722812 (+) 186 WP_011532874.1 Trm112 family protein -
  JYG34_RS07650 (JYG34_07650) kdsB 1722809..1723573 (+) 765 WP_213660148.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JYG34_RS07655 (JYG34_07655) - 1723573..1724037 (+) 465 WP_213660149.1 low molecular weight protein-tyrosine-phosphatase -
  JYG34_RS07660 (JYG34_07660) murB 1724034..1725053 (+) 1020 WP_213660150.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=541846 JYG34_RS07630 WP_028690976.1 1720516..1721151(+) (exbB) [Pseudomonas entomophila strain Small]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=541846 JYG34_RS07630 WP_028690976.1 1720516..1721151(+) (exbB) [Pseudomonas entomophila strain Small]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATCCTGAGTTCCATCGCCGCCATGGCGATCGTCGT
CGAGCGCCTGTGGACCTTGCGCGCCAGCCGTGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGTGCCGACTCGCCGCTGGGCGAAATCCTGGCCGCCGGCCTGGCCAAT
TCGCGCCACGGCCGCGAGATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGGGTCATCCACGAGCTGGAGCGCTACAT
CAGCACCCTTGGCACCATCGCCGCCATGGCCCCGCTGCTCGGCCTGCTGGGTACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCAGTGCTGGCCGGCGGTATCTCCAAGGCCCTGGTCACCACCGCG
GCGGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGAAT
GGAGCAGGAAGCGATCAAGCTGGTCGAGGTGCTGCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y8SF72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829