Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   JYG38_RS15395 Genome accession   NZ_CP070981
Coordinates   3463763..3465988 (-) Length   741 a.a.
NCBI ID   WP_213632014.1    Uniprot ID   -
Organism   Pseudomonas rhodesiae strain DLA23     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3458763..3470988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG38_RS15360 (JYG38_15360) murB 3459143..3460162 (-) 1020 WP_094065860.1 UDP-N-acetylmuramate dehydrogenase -
  JYG38_RS15365 (JYG38_15365) - 3460159..3460623 (-) 465 WP_094065859.1 low molecular weight protein-tyrosine-phosphatase -
  JYG38_RS15370 (JYG38_15370) kdsB 3460623..3461387 (-) 765 WP_167417852.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JYG38_RS15375 (JYG38_15375) - 3461384..3461569 (-) 186 WP_011060103.1 Trm112 family protein -
  JYG38_RS15380 (JYG38_15380) lpxK 3461593..3462603 (-) 1011 WP_213632010.1 tetraacyldisaccharide 4'-kinase -
  JYG38_RS15385 (JYG38_15385) - 3462603..3463031 (-) 429 WP_213632012.1 biopolymer transporter ExbD -
  JYG38_RS15390 (JYG38_15390) exbB 3463028..3463663 (-) 636 WP_034098613.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JYG38_RS15395 (JYG38_15395) comA 3463763..3465988 (-) 2226 WP_213632014.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JYG38_RS15400 (JYG38_15400) - 3466123..3466638 (+) 516 WP_034098616.1 DUF2062 domain-containing protein -
  JYG38_RS15405 (JYG38_15405) - 3466642..3468012 (-) 1371 WP_213632016.1 sensor histidine kinase -
  JYG38_RS15410 (JYG38_15410) - 3467999..3468715 (-) 717 WP_034098618.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80316.30 Da        Isoelectric Point: 10.9753

>NTDB_id=541825 JYG38_RS15395 WP_213632014.1 3463763..3465988(-) (comA) [Pseudomonas rhodesiae strain DLA23]
MKTGMFALASGLLALVFLPALPATGWLIAMLVLALMALPFRTYPLAFFLMGLSWACFSAQWALNDRLSLKLDGQTRWVEG
WVAGLPQQTDDGVRFDLIDGRSRKARLPQRIRVSWRGGPPVRSGERWRLAISLKRPSGLLNFHGFDREAWLLARRIGATG
SVKDGERLAPARNAWRDGLRQRLLAVDAQGREAGLAALVLGDGSGLSATDWQILQDTGTVHLLVISGQHIGLLAGLIYGL
VAGLARYGVWPRGWPWLPWACGLAFAATLSYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLAFNGVLILEPL
ASLQAGFWLSFAAVAVLILAFSGRLGPWSPWQVWTRPQCVIAIGLFPVLLGLGLPISMSAPLANLVAVPWISLVVLPLAL
LGTALLAVPFVGEGLLWLAGGALQGLFVGLGWLAGYAPAWVPAQVPLAAWLISLLGAVLLLLPKGVPLRLLGWPMLLLAV
FPPRESVPYGQVEVLQLDVGQGQSLILRTRNHTLVYDAGPRWGALDLGARVVLPSLKKLGVGSLDLLLLSHADADHAGGA
AAVARGMPIRRVVGGETEGLPAFLGTQPCVSGEQWQWDGVMFEMWQWPDAIGGNAKSCVLQVQANGERLLLTGDIDRDAE
RALLNSPLAVPTDWLQAPHHGSRSSSSRPFLQRLAPRSVLISRGRGNAFGHPHPQVMERYRALGSRVYDSAEQGAVRVQL
GAFAEPVVARGQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=541825 JYG38_RS15395 WP_213632014.1 3463763..3465988(-) (comA) [Pseudomonas rhodesiae strain DLA23]
ATGAAGACAGGGATGTTCGCGCTTGCATCAGGGCTGCTTGCTCTGGTTTTTCTACCGGCACTGCCCGCCACGGGCTGGCT
GATCGCCATGCTGGTGCTGGCGTTGATGGCGTTGCCATTTCGCACGTACCCGCTGGCGTTTTTTCTGATGGGGTTGAGTT
GGGCGTGTTTCAGCGCGCAGTGGGCCTTGAATGATCGGCTGTCGCTGAAGCTGGATGGGCAGACGCGTTGGGTCGAGGGC
TGGGTGGCCGGGTTACCGCAACAGACCGACGATGGCGTGCGCTTCGACCTGATCGACGGGCGGTCGCGTAAAGCCCGATT
ACCCCAGCGCATCCGCGTGTCCTGGCGCGGAGGTCCGCCCGTGCGCAGCGGTGAACGCTGGCGCTTGGCAATCAGCCTCA
AACGACCGTCCGGATTACTGAATTTTCACGGCTTTGACCGCGAAGCCTGGCTGTTGGCCCGGCGCATCGGTGCAACCGGC
TCGGTAAAGGACGGTGAGCGCCTGGCCCCGGCGCGCAATGCGTGGCGCGATGGCCTGCGTCAACGGCTGCTGGCCGTGGA
TGCCCAAGGCCGCGAGGCGGGCCTGGCCGCTTTGGTGCTGGGGGATGGCTCCGGTCTGTCCGCTACGGATTGGCAGATTC
TGCAGGACACCGGCACCGTGCATCTGCTGGTGATTTCCGGGCAGCACATCGGCCTGTTGGCGGGGTTGATATACGGGCTG
GTTGCCGGGTTGGCTCGTTACGGAGTTTGGCCGCGAGGTTGGCCATGGCTACCCTGGGCGTGCGGCCTGGCCTTTGCCGC
TACACTCAGTTACGGCTTGCTGGCCGGGTTCGGTGTGCCGGTGCAGCGCGCGTGCGTGATGGTGGGGTTGGTGCTGCTCT
GGCGTTTGCGCTTTCGCCATCTGGGCGTGTGGTGGCCGTTGCTGCTGGCCTTCAATGGGGTGCTGATCCTGGAACCCCTG
GCCAGTCTACAGGCGGGTTTCTGGCTGTCATTTGCGGCAGTGGCGGTGCTGATCCTGGCGTTCAGCGGCCGCTTAGGACC
GTGGAGCCCTTGGCAGGTGTGGACCCGTCCGCAATGCGTGATCGCCATCGGGCTGTTTCCGGTGTTGTTGGGGCTGGGGT
TGCCCATCAGTATGAGTGCGCCGCTGGCCAATCTGGTGGCGGTGCCGTGGATCAGCCTGGTGGTGCTGCCACTGGCGCTG
CTGGGCACCGCGCTGTTGGCGGTGCCCTTCGTGGGGGAGGGTTTGTTGTGGCTGGCGGGTGGCGCGTTGCAGGGGTTATT
CGTCGGCTTGGGCTGGCTCGCCGGGTACGCGCCCGCTTGGGTACCGGCGCAGGTGCCCTTGGCGGCCTGGCTGATCAGCC
TGCTCGGCGCGGTGTTGCTGTTATTGCCCAAAGGCGTGCCGTTGCGCCTGCTGGGTTGGCCGATGTTGCTGCTGGCGGTG
TTCCCTCCTCGAGAATCGGTGCCCTATGGGCAGGTCGAGGTGCTGCAGTTGGACGTCGGTCAAGGGCAATCGCTGATTCT
GCGCACACGCAATCACACCCTGGTTTACGATGCTGGCCCACGCTGGGGAGCGCTCGACCTCGGCGCGCGCGTGGTGCTGC
CGTCGTTGAAAAAACTCGGCGTGGGCAGCTTGGACCTGCTATTGCTCAGCCATGCCGATGCCGATCACGCGGGGGGCGCG
GCCGCAGTGGCCCGAGGCATGCCGATCAGGCGCGTGGTAGGCGGCGAAACCGAGGGCTTGCCGGCGTTTTTGGGCACCCA
GCCTTGTGTCAGTGGCGAGCAGTGGCAATGGGACGGGGTCATGTTTGAAATGTGGCAGTGGCCTGATGCTATTGGCGGCA
ACGCGAAATCCTGCGTCTTGCAGGTGCAAGCCAACGGTGAGCGTCTGCTGCTGACCGGCGATATCGATCGCGACGCTGAA
CGGGCGCTGCTCAACTCGCCGCTGGCGGTGCCCACCGACTGGCTGCAAGCGCCGCATCATGGCAGTCGAAGTTCGTCCTC
CAGGCCTTTCCTGCAACGGCTGGCGCCCCGGTCTGTGCTTATTTCACGCGGGCGCGGCAACGCCTTCGGTCATCCCCATC
CGCAGGTCATGGAGCGCTATCGGGCACTCGGCAGTCGGGTCTATGACAGCGCCGAACAAGGCGCCGTACGCGTGCAATTA
GGGGCCTTTGCCGAACCGGTCGTTGCCCGTGGTCAACGGCGTTTCTGGCGCGAACGGTTACCCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60

97.166

0.583
  comA Ralstonia pseudosolanacearum GMI1000

35.302

100

0.379