Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JYG38_RS15390 Genome accession   NZ_CP070981
Coordinates   3463028..3463663 (-) Length   211 a.a.
NCBI ID   WP_034098613.1    Uniprot ID   A0A2G0X9Z2
Organism   Pseudomonas rhodesiae strain DLA23     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3458028..3468663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG38_RS15355 (JYG38_15355) - 3458409..3459080 (+) 672 WP_034098601.1 Bax inhibitor-1/YccA family protein -
  JYG38_RS15360 (JYG38_15360) murB 3459143..3460162 (-) 1020 WP_094065860.1 UDP-N-acetylmuramate dehydrogenase -
  JYG38_RS15365 (JYG38_15365) - 3460159..3460623 (-) 465 WP_094065859.1 low molecular weight protein-tyrosine-phosphatase -
  JYG38_RS15370 (JYG38_15370) kdsB 3460623..3461387 (-) 765 WP_167417852.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JYG38_RS15375 (JYG38_15375) - 3461384..3461569 (-) 186 WP_011060103.1 Trm112 family protein -
  JYG38_RS15380 (JYG38_15380) lpxK 3461593..3462603 (-) 1011 WP_213632010.1 tetraacyldisaccharide 4'-kinase -
  JYG38_RS15385 (JYG38_15385) - 3462603..3463031 (-) 429 WP_213632012.1 biopolymer transporter ExbD -
  JYG38_RS15390 (JYG38_15390) exbB 3463028..3463663 (-) 636 WP_034098613.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JYG38_RS15395 (JYG38_15395) comA 3463763..3465988 (-) 2226 WP_213632014.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JYG38_RS15400 (JYG38_15400) - 3466123..3466638 (+) 516 WP_034098616.1 DUF2062 domain-containing protein -
  JYG38_RS15405 (JYG38_15405) - 3466642..3468012 (-) 1371 WP_213632016.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22827.95 Da        Isoelectric Point: 6.8765

>NTDB_id=541824 JYG38_RS15390 WP_034098613.1 3463028..3463663(-) (exbB) [Pseudomonas rhodesiae strain DLA23]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWSWIKNKQLDKEKLKALRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGTGMSANAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLVGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=541824 JYG38_RS15390 WP_034098613.1 3463028..3463663(-) (exbB) [Pseudomonas rhodesiae strain DLA23]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGTTCCATCGCCGCGCTCGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGTGCCAGTCGTGTCACCCCTGAGCATCTGCTGGGGCAGGTCTGGTCCTGGATCAAGAACA
AACAACTGGACAAGGAAAAGCTCAAGGCCCTGCGCGCCGACTCGCCGCTGGGTGAGATTCTGGCCGCGGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCGCGGGTGATCCACGAACTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGTTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTTCGTTCATGGGCACCGGCATGAGCGCTAACGCGGCCGTGCTGGCCGGCGGTATTTCCAAGGCGCTGATTACCACGGCG
GCGGGCTTGATGGTGGGGATTCCATCGGTGTTCTTCCACCGGTTCCTGCAACGGCGCGTCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGGGATCGTGACGTGGATCTGGTTGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G0X9Z2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853