Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   JYG35_RS16120 Genome accession   NZ_CP070980
Coordinates   3574019..3576244 (-) Length   741 a.a.
NCBI ID   WP_213547397.1    Uniprot ID   -
Organism   Pseudomonas rhodesiae strain AAMF24     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3569019..3581244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG35_RS16085 (JYG35_16085) murB 3569399..3570418 (-) 1020 WP_034098603.1 UDP-N-acetylmuramate dehydrogenase -
  JYG35_RS16090 (JYG35_16090) - 3570415..3570879 (-) 465 WP_034098605.1 low molecular weight protein-tyrosine-phosphatase -
  JYG35_RS16095 (JYG35_16095) kdsB 3570879..3571643 (-) 765 WP_034098606.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JYG35_RS16100 (JYG35_16100) - 3571640..3571825 (-) 186 WP_011060103.1 Trm112 family protein -
  JYG35_RS16105 (JYG35_16105) lpxK 3571849..3572859 (-) 1011 WP_034098609.1 tetraacyldisaccharide 4'-kinase -
  JYG35_RS16110 (JYG35_16110) - 3572859..3573287 (-) 429 WP_034098611.1 biopolymer transporter ExbD -
  JYG35_RS16115 (JYG35_16115) exbB 3573284..3573919 (-) 636 WP_034098613.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JYG35_RS16120 (JYG35_16120) comA 3574019..3576244 (-) 2226 WP_213547397.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JYG35_RS16125 (JYG35_16125) - 3576379..3576894 (+) 516 WP_034098616.1 DUF2062 domain-containing protein -
  JYG35_RS16130 (JYG35_16130) - 3576898..3578268 (-) 1371 WP_169868736.1 sensor histidine kinase -
  JYG35_RS16135 (JYG35_16135) - 3578255..3578971 (-) 717 WP_034098618.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80422.49 Da        Isoelectric Point: 10.9753

>NTDB_id=541803 JYG35_RS16120 WP_213547397.1 3574019..3576244(-) (comA) [Pseudomonas rhodesiae strain AAMF24]
MKTGMFALASGLLALVFLPALPATGWLIAMLVLALMALPFRTYPLAFFLMGLSWACFSAQWALNDRLSLKLDGQTRWVEG
WVAGLPQQTDDGVRFDLIDGRSRKARLPQRIRVSWRGGPPVRSGERWRLAISLKRPSGLLNFHGFDREAWLLARRVGATG
SVKDGERLAPARNAWREGLRQRLLAVDAQGREAGLAALVLGDGSGLSATDWQILQDTGTVHLLVISGQHIGLLAGLIYGL
VAGLARYGVWPRGWPWLPWACGLAFAAALSYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLAFNGVLILEPL
ASLQAGFWLSFAAVAVLILAFSGRLGPWSPWQVWTRPQCVIAIGLFPVLLVLGLPISMSAPLANLVAVPWISLMVLPLAL
LGAALLAVPFVGEGLLWLAGGALQGLFVGLGWLAEYAPAWVPAQVPWAAWLISLLGAVLLLLPKGVPLRLLGWPMLLLAV
FPPREPVPYGQVEVLQLDVGQGQSLILRTRNHTLVYDAGPRSGALDLGARVVLPSLKKLGVGSLDLLLLSHADADHAGGA
AALARGMPIRRVVGGETEGLPAFLGTQPCVSGEQWQWDGVMFEMWQWPDAIGGNAKSCVLQVQANGERLLLTGDIDRDAE
RALLNSPLAVPTHWLQAPHHGSRSSSSRPFLQRLAPRSVLISRGRGNAFGHPHPQVMERYRALGSRVYDSAEQGAVRVQL
GAFAEPVVARGQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=541803 JYG35_RS16120 WP_213547397.1 3574019..3576244(-) (comA) [Pseudomonas rhodesiae strain AAMF24]
ATGAAGACAGGGATGTTCGCGCTTGCATCAGGGTTGCTTGCTCTGGTTTTTCTACCGGCACTGCCCGCCACGGGCTGGCT
GATCGCCATGCTGGTGCTGGCGTTGATGGCGTTGCCATTTCGCACGTACCCGCTGGCGTTTTTTCTGATGGGGTTGAGTT
GGGCGTGTTTCAGCGCGCAGTGGGCCTTGAATGATCGGCTGTCGCTGAAGCTGGATGGGCAGACGCGTTGGGTCGAGGGT
TGGGTGGCCGGGTTACCGCAACAGACCGACGATGGCGTGCGCTTCGACCTGATCGACGGGCGGTCGCGTAAAGCCCGATT
ACCCCAGCGCATCCGCGTGTCCTGGCGCGGAGGTCCGCCCGTGCGCAGCGGTGAACGCTGGCGCCTGGCAATCAGCCTCA
AACGACCGTCCGGATTACTGAATTTTCACGGCTTTGACCGCGAAGCCTGGCTGCTGGCCCGGCGCGTCGGTGCAACCGGC
TCGGTAAAGGACGGTGAGCGCCTGGCCCCGGCGCGCAATGCGTGGCGCGAAGGCCTGCGTCAACGGTTGCTGGCCGTGGA
TGCCCAAGGCCGCGAGGCGGGCCTGGCCGCTTTGGTGCTGGGGGATGGCTCCGGTCTGTCCGCTACGGATTGGCAGATTC
TGCAGGACACCGGCACCGTGCATCTGCTGGTGATTTCCGGGCAGCACATCGGCCTGTTGGCGGGGTTGATCTACGGCCTG
GTTGCCGGGTTGGCTCGTTACGGAGTTTGGCCGCGAGGTTGGCCATGGCTACCCTGGGCGTGCGGCCTGGCCTTTGCCGC
TGCGCTCAGTTACGGCTTGCTGGCCGGGTTCGGTGTGCCGGTGCAGCGCGCGTGCGTAATGGTGGGGTTGGTGCTGCTCT
GGCGATTGCGCTTTCGCCATCTGGGCGTGTGGTGGCCGTTGCTGTTGGCCTTCAATGGGGTGCTGATCCTGGAACCCCTG
GCCAGCCTGCAAGCGGGTTTCTGGCTGTCATTTGCGGCAGTGGCGGTGCTGATCCTGGCGTTCAGCGGCCGCTTAGGACC
GTGGAGCCCTTGGCAGGTGTGGACCCGCCCGCAATGCGTGATCGCCATCGGGCTGTTTCCGGTATTGTTGGTGCTGGGGT
TGCCCATCAGTATGAGTGCGCCGCTGGCCAATCTTGTGGCGGTGCCGTGGATCAGCCTGATGGTGCTGCCACTAGCGCTG
CTGGGCGCTGCGCTGTTGGCGGTGCCCTTCGTGGGGGAGGGTTTGTTGTGGCTGGCGGGTGGCGCGTTGCAGGGGTTATT
CGTCGGCTTGGGTTGGCTCGCCGAGTACGCGCCCGCTTGGGTACCGGCGCAGGTGCCCTGGGCGGCCTGGCTGATCAGCC
TGCTCGGCGCGGTGTTGCTGTTATTGCCCAAAGGCGTGCCGCTGCGCCTGCTGGGTTGGCCGATGCTGTTGCTGGCCGTG
TTCCCTCCTCGAGAACCGGTGCCCTATGGGCAGGTCGAGGTGCTGCAGTTGGACGTCGGTCAAGGGCAATCGCTGATTCT
GCGCACACGCAATCACACCCTGGTTTACGATGCTGGCCCACGTTCGGGAGCGCTCGACCTCGGCGCGCGCGTGGTGCTGC
CGTCGTTGAAAAAACTCGGCGTGGGCAGCTTGGACCTGCTATTGCTCAGCCATGCCGATGCCGATCACGCGGGGGGCGCG
GCCGCATTGGCCCGAGGCATGCCGATCAGGCGCGTGGTAGGCGGCGAAACCGAGGGCTTGCCGGCGTTTTTGGGCACCCA
GCCTTGTGTCAGTGGCGAGCAGTGGCAATGGGACGGGGTCATGTTTGAAATGTGGCAGTGGCCTGATGCTATTGGCGGCA
ACGCGAAATCCTGCGTCTTGCAGGTGCAAGCCAACGGTGAGCGTCTGCTGCTGACCGGCGATATCGATCGCGACGCTGAA
CGGGCGCTGCTCAACTCGCCGCTGGCGGTGCCCACCCACTGGCTGCAAGCGCCGCATCATGGCAGTCGAAGTTCGTCCTC
CAGGCCTTTCTTGCAACGGCTGGCACCCCGGTCTGTGCTTATTTCACGCGGGCGCGGCAACGCCTTCGGTCATCCCCATC
CGCAGGTCATGGAGCGCTATCGGGCACTCGGCAGCCGGGTCTATGACAGCGCCGAACAAGGCGCCGTACGCGTGCAATTA
GGGGCGTTTGCCGAACCGGTCGTTGCCCGTGGTCAACGGCGTTTCTGGCGCGAACGGTTACCCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.722

97.166

0.58
  comA Ralstonia pseudosolanacearum GMI1000

34.457

100

0.372