Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JYG35_RS16115 Genome accession   NZ_CP070980
Coordinates   3573284..3573919 (-) Length   211 a.a.
NCBI ID   WP_034098613.1    Uniprot ID   A0A2G0X9Z2
Organism   Pseudomonas rhodesiae strain AAMF24     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3568284..3578919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG35_RS16080 (JYG35_16080) - 3568665..3569336 (+) 672 WP_034098601.1 Bax inhibitor-1/YccA family protein -
  JYG35_RS16085 (JYG35_16085) murB 3569399..3570418 (-) 1020 WP_034098603.1 UDP-N-acetylmuramate dehydrogenase -
  JYG35_RS16090 (JYG35_16090) - 3570415..3570879 (-) 465 WP_034098605.1 low molecular weight protein-tyrosine-phosphatase -
  JYG35_RS16095 (JYG35_16095) kdsB 3570879..3571643 (-) 765 WP_034098606.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JYG35_RS16100 (JYG35_16100) - 3571640..3571825 (-) 186 WP_011060103.1 Trm112 family protein -
  JYG35_RS16105 (JYG35_16105) lpxK 3571849..3572859 (-) 1011 WP_034098609.1 tetraacyldisaccharide 4'-kinase -
  JYG35_RS16110 (JYG35_16110) - 3572859..3573287 (-) 429 WP_034098611.1 biopolymer transporter ExbD -
  JYG35_RS16115 (JYG35_16115) exbB 3573284..3573919 (-) 636 WP_034098613.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JYG35_RS16120 (JYG35_16120) comA 3574019..3576244 (-) 2226 WP_213547397.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JYG35_RS16125 (JYG35_16125) - 3576379..3576894 (+) 516 WP_034098616.1 DUF2062 domain-containing protein -
  JYG35_RS16130 (JYG35_16130) - 3576898..3578268 (-) 1371 WP_169868736.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22827.95 Da        Isoelectric Point: 6.8765

>NTDB_id=541802 JYG35_RS16115 WP_034098613.1 3573284..3573919(-) (exbB) [Pseudomonas rhodesiae strain AAMF24]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWSWIKNKQLDKEKLKALRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGTGMSANAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLVGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=541802 JYG35_RS16115 WP_034098613.1 3573284..3573919(-) (exbB) [Pseudomonas rhodesiae strain AAMF24]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGTTCCATCGCCGCGCTCGGCATCGTTGC
CGAACGTCTGTGGACCCTGCGTGCCAGTCGTGTCACCCCTGAGCATCTGCTGGGGCAGGTCTGGTCCTGGATCAAGAACA
AACAACTGGACAAGGAAAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGTGAGATTCTGGCCGCGGGCCTGGCCAAC
TCCAAGCACGGTCGTGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCGCGGGTGATCCACGAACTGGAGCGCTATAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGTTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTTCGTTCATGGGCACCGGTATGAGCGCTAACGCGGCCGTGCTGGCCGGTGGTATTTCCAAGGCGCTGATTACCACGGCG
GCGGGCTTGATGGTGGGGATTCCATCGGTGTTCTTCCACCGGTTCCTGCAACGGCGCGTCGATGAGCTGGTGGTAGGCAT
GGAGCAGGAAGCCATCAAGCTGGTAGAGGTGGTGCAGGGGGATCGCGACGTGGATCTGGTTGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G0X9Z2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853