Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JYG31_RS16745 Genome accession   NZ_CP070976
Coordinates   3239872..3240516 (-) Length   214 a.a.
NCBI ID   WP_101864137.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MBH1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3234872..3245516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG31_RS16710 (JYG31_16710) - 3236065..3236496 (+) 432 WP_024122673.1 Na(+)/H(+) antiporter subunit B -
  JYG31_RS16715 (JYG31_16715) - 3236496..3236837 (+) 342 WP_024122674.1 Na(+)/H(+) antiporter subunit C -
  JYG31_RS16720 (JYG31_16720) - 3236830..3238311 (+) 1482 WP_213417882.1 Na+/H+ antiporter subunit D -
  JYG31_RS16725 (JYG31_16725) - 3238317..3238793 (+) 477 WP_185848675.1 Na+/H+ antiporter subunit E -
  JYG31_RS16730 (JYG31_16730) - 3238793..3239077 (+) 285 WP_024122677.1 Na(+)/H(+) antiporter subunit F1 -
  JYG31_RS16735 (JYG31_16735) mnhG 3239061..3239435 (+) 375 WP_024122678.1 monovalent cation/H(+) antiporter subunit G -
  JYG31_RS16740 (JYG31_16740) - 3239474..3239854 (-) 381 WP_044158943.1 hotdog fold thioesterase -
  JYG31_RS16745 (JYG31_16745) comA 3239872..3240516 (-) 645 WP_101864137.1 two-component system response regulator ComA Regulator
  JYG31_RS16750 (JYG31_16750) comP 3240597..3242906 (-) 2310 WP_213417883.1 two-component system sensor histidine kinase ComP Regulator
  JYG31_RS16755 (JYG31_16755) comX 3242922..3243089 (-) 168 WP_044158946.1 competence pheromone ComX Regulator
  JYG31_RS16760 (JYG31_16760) comQ 3243073..3243978 (-) 906 WP_213418755.1 polyprenyl synthetase family protein Regulator
  JYG31_RS16765 (JYG31_16765) degQ 3244163..3244303 (-) 141 WP_024122683.1 degradation enzyme regulation protein DegQ Regulator
  JYG31_RS16770 (JYG31_16770) - 3244764..3245132 (+) 369 WP_103671364.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24123.45 Da        Isoelectric Point: 4.6788

>NTDB_id=541758 JYG31_RS16745 WP_101864137.1 3239872..3240516(-) (comA) [Bacillus halotolerans strain MBH1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIHQHDFSSYDLILMDLNLGGDVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=541758 JYG31_RS16745 WP_101864137.1 3239872..3240516(-) (comA) [Bacillus halotolerans strain MBH1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCCAGCGAACAGTTCATACACCAGCATGATTTCTCATCATATGATCTCATCTTAA
TGGATTTGAACTTAGGCGGCGATGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTATATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGCGCCATCAGCAAAAC
CGAATCAAAGGAAAAGATCACCCAATACATATATCACGTGCTCAACGGAGAAATTTTAGTCGATTTCGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCCCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCAAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGTTTTACCAACCAAGAAATTGCAGATGCGCTTCATTTAAGCAAGCGGTCCATCGAATA
CAGCCTGACGTCGATTTTCAACAAGCTTAATGTCGGTTCCAGGACGGAAGCGGTGTTGATTGCAAAATCAGACGGTGTGC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

99.065

100

0.991