Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   JYG31_RS13365 Genome accession   NZ_CP070976
Coordinates   2590577..2591647 (-) Length   356 a.a.
NCBI ID   WP_213417739.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MBH1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2585577..2596647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG31_RS13320 (JYG31_13320) tapA 2586045..2586806 (-) 762 WP_213417736.1 amyloid fiber anchoring/assembly protein TapA -
  JYG31_RS13325 (JYG31_13325) - 2587084..2587407 (+) 324 WP_024122040.1 YqzG/YhdC family protein -
  JYG31_RS13330 (JYG31_13330) - 2587450..2587629 (-) 180 WP_003236949.1 YqzE family protein -
  JYG31_RS13335 (JYG31_13335) comGG 2587701..2588075 (-) 375 WP_188323133.1 competence type IV pilus minor pilin ComGG Machinery gene
  JYG31_RS13340 (JYG31_13340) comGF 2588076..2588465 (-) 390 WP_213417737.1 competence type IV pilus minor pilin ComGF Machinery gene
  JYG31_RS13345 (JYG31_13345) comGE 2588491..2588838 (-) 348 WP_095713273.1 competence type IV pilus minor pilin ComGE Machinery gene
  JYG31_RS13350 (JYG31_13350) comGD 2588822..2589253 (-) 432 WP_103672268.1 competence type IV pilus minor pilin ComGD Machinery gene
  JYG31_RS13355 (JYG31_13355) comGC 2589243..2589539 (-) 297 WP_010334925.1 competence type IV pilus major pilin ComGC Machinery gene
  JYG31_RS13360 (JYG31_13360) comGB 2589553..2590590 (-) 1038 WP_213417738.1 competence type IV pilus assembly protein ComGB Machinery gene
  JYG31_RS13365 (JYG31_13365) comGA 2590577..2591647 (-) 1071 WP_213417739.1 competence protein ComGA Machinery gene
  JYG31_RS13370 (JYG31_13370) - 2591969..2592379 (-) 411 WP_185848827.1 CBS domain-containing protein -
  JYG31_RS13375 (JYG31_13375) - 2592442..2593395 (-) 954 WP_095713277.1 magnesium transporter CorA family protein -
  JYG31_RS13380 (JYG31_13380) - 2593539..2594868 (+) 1330 Protein_2615 hemolysin family protein -
  JYG31_RS13385 (JYG31_13385) - 2594948..2595787 (-) 840 WP_024122051.1 STAS domain-containing protein -
  JYG31_RS13395 (JYG31_13395) mgsR 2596020..2596400 (-) 381 WP_026014741.1 transcriptional regulator MgsR -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40492.74 Da        Isoelectric Point: 8.8394

>NTDB_id=541744 JYG31_RS13365 WP_213417739.1 2590577..2591647(-) (comGA) [Bacillus halotolerans strain MBH1]
MDSIEKISKILIEEAYRTKASDIHIVPRERDAIIHFRVDHALLKKRNMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGDVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLIQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSTGLKAILRHDPDMIILGEIRDAETAQIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCEDGCSSVYCRLSRNVRRASVYELLYGKNLQQCIQEAKGD
NANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHETD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=541744 JYG31_RS13365 WP_213417739.1 2590577..2591647(-) (comGA) [Bacillus halotolerans strain MBH1]
TTGGATTCGATAGAAAAAATAAGCAAAATTTTAATTGAAGAGGCATATAGGACGAAGGCCTCTGACATTCACATTGTGCC
GAGGGAGCGGGACGCAATCATTCATTTTCGGGTTGACCATGCATTGCTGAAAAAGCGAAACATGAAAAAAGAAGAGTGTG
TAAGACTCATTTCTCATTTTAAGTTTCTCTCAGCTATGGACATAGGGGAAAGAAGAAAGCCGCAAAATGGATCTCTTACT
CTAAAATTAAAAGAGGGTGACGTTCACTTAAGGATGTCAACGCTCCCGACAATTAACGAAGAAAGCCTCGTCATCAGAGT
GATGCCTCAGTATAATATCCCTTCGATTGACAAACTGTCTTTATTCCCAAAGACAGGAGCCACCTTGCTATCATTTTTAA
AACACTCCCACGGCATGCTGATTTTTACCGGACCAACAGGCTCTGGGAAAACAACAACATTATATTCTCTGATCCAATAT
GCAAAAAAACATTTCAATCGAAACATTGTCACACTTGAAGATCCAGTGGAAACGAGGGATGAAGATGTTCTTCAAGTGCA
GGTGAATGAAAAAGCCGGTGTCACATATTCCACAGGGCTGAAGGCTATTTTGCGCCATGACCCCGATATGATCATCTTAG
GTGAGATTAGAGACGCTGAAACAGCCCAAATTGCGGTGCGGGCAGCGATGACTGGTCATTTAGTGCTGACGAGCCTTCAT
ACGAGAGATGCGAAGGGCGCGATTTACAGGCTGCTTGAATTTGGCATTAATATGAATGAAATCGAGCAAACGGTTATTGC
GATAGCGGCTCAGCGTTTAGTTGATTTGGCTTGCCCGTTTTGTGAAGACGGATGTTCATCAGTGTATTGCCGCCTGTCAC
GAAATGTCAGGAGAGCAAGCGTATACGAGCTGCTTTACGGGAAAAACCTTCAGCAGTGTATCCAGGAAGCGAAAGGGGAC
AATGCAAATTACCAATATCAAACGCTGCGTCAAATTATAAGAAAAGGGATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAACAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

96.067

100

0.961