Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   JYG31_RS13360 Genome accession   NZ_CP070976
Coordinates   2589553..2590590 (-) Length   345 a.a.
NCBI ID   WP_213417738.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MBH1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2584553..2595590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG31_RS13310 (JYG31_13310) tasA 2584639..2585424 (-) 786 WP_095713270.1 biofilm matrix protein TasA -
  JYG31_RS13315 (JYG31_13315) - 2585489..2586073 (-) 585 WP_213417735.1 signal peptidase I -
  JYG31_RS13320 (JYG31_13320) tapA 2586045..2586806 (-) 762 WP_213417736.1 amyloid fiber anchoring/assembly protein TapA -
  JYG31_RS13325 (JYG31_13325) - 2587084..2587407 (+) 324 WP_024122040.1 YqzG/YhdC family protein -
  JYG31_RS13330 (JYG31_13330) - 2587450..2587629 (-) 180 WP_003236949.1 YqzE family protein -
  JYG31_RS13335 (JYG31_13335) comGG 2587701..2588075 (-) 375 WP_188323133.1 competence type IV pilus minor pilin ComGG Machinery gene
  JYG31_RS13340 (JYG31_13340) comGF 2588076..2588465 (-) 390 WP_213417737.1 competence type IV pilus minor pilin ComGF Machinery gene
  JYG31_RS13345 (JYG31_13345) comGE 2588491..2588838 (-) 348 WP_095713273.1 competence type IV pilus minor pilin ComGE Machinery gene
  JYG31_RS13350 (JYG31_13350) comGD 2588822..2589253 (-) 432 WP_103672268.1 competence type IV pilus minor pilin ComGD Machinery gene
  JYG31_RS13355 (JYG31_13355) comGC 2589243..2589539 (-) 297 WP_010334925.1 competence type IV pilus major pilin ComGC Machinery gene
  JYG31_RS13360 (JYG31_13360) comGB 2589553..2590590 (-) 1038 WP_213417738.1 competence type IV pilus assembly protein ComGB Machinery gene
  JYG31_RS13365 (JYG31_13365) comGA 2590577..2591647 (-) 1071 WP_213417739.1 competence protein ComGA Machinery gene
  JYG31_RS13370 (JYG31_13370) - 2591969..2592379 (-) 411 WP_185848827.1 CBS domain-containing protein -
  JYG31_RS13375 (JYG31_13375) - 2592442..2593395 (-) 954 WP_095713277.1 magnesium transporter CorA family protein -
  JYG31_RS13380 (JYG31_13380) - 2593539..2594868 (+) 1330 Protein_2615 hemolysin family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39971.16 Da        Isoelectric Point: 9.5769

>NTDB_id=541743 JYG31_RS13360 WP_213417738.1 2589553..2590590(-) (comGB) [Bacillus halotolerans strain MBH1]
MKQIRKVWPLKDQAYLLKRLGEMTAGGYSLLDGLRLMQLQMNKRQLADLANAISRLREGESFYHVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKAGQAEQIKRVLRYPLFLIFTVGVMLYMLQYIIIPQFSGIYQSMNVETSRTTDIIFAFF
QHLDAVFILMPILAAGIGLYYWFVFKKKSPDHQMLICVSIPLFGKLVRLFNSYFFSLQLSSLLASGLSIYDSLKAFRHQT
FLPFYRHEAEQMIERLKAGETIEAALCKRPFYENDFSKVISHGQLSGRLDRELFTYSQFILQRLEDKSQKWTGILQPIIY
GFVAGMILIVYLSMLLPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=541743 JYG31_RS13360 WP_213417738.1 2589553..2590590(-) (comGB) [Bacillus halotolerans strain MBH1]
ATGAAACAGATTAGAAAAGTTTGGCCGTTAAAGGATCAAGCCTATTTACTGAAAAGGCTGGGTGAAATGACAGCGGGCGG
ATACAGTCTTTTAGACGGATTGCGCCTGATGCAGCTGCAAATGAATAAAAGGCAGCTGGCGGACTTGGCTAACGCAATAA
GCCGGTTGAGAGAAGGGGAATCGTTTTACCATGTATTAAAGAGCTTGTCATTTCATAAGGAAGCCGTCGGTATTTGTTAT
TTTGCTGAAACACATGGGGAATTGCCGGCTTCCATGATTCAGAGCGGAGAGCTGCTGGAACGAAAAGCAGGTCAGGCAGA
ACAGATAAAAAGGGTGTTGCGATATCCTCTTTTCCTCATCTTTACCGTTGGTGTCATGCTTTATATGCTGCAATACATCA
TCATCCCTCAGTTTTCCGGTATTTATCAATCGATGAATGTAGAAACGTCACGCACAACAGACATCATTTTTGCGTTTTTT
CAGCACCTTGATGCTGTGTTCATATTAATGCCCATTTTGGCTGCAGGTATAGGTCTTTATTATTGGTTTGTGTTCAAGAA
AAAATCCCCTGACCATCAAATGCTCATTTGCGTAAGCATTCCTTTGTTTGGAAAGCTGGTCAGGCTGTTTAACAGCTACT
TTTTTTCTTTACAGCTGAGCAGTCTGCTAGCATCAGGTCTTTCTATTTATGACAGTTTGAAAGCATTTAGGCATCAAACG
TTTCTCCCTTTTTACCGCCATGAAGCTGAACAAATGATTGAACGGTTAAAAGCCGGTGAAACCATTGAAGCTGCTTTATG
CAAACGGCCTTTTTACGAAAATGATTTTTCAAAAGTGATATCTCATGGCCAGCTAAGCGGCCGCTTGGATCGGGAACTCT
TCACATACAGCCAGTTTATATTGCAGCGGCTTGAGGACAAGTCACAAAAATGGACAGGCATTCTTCAGCCCATTATTTAC
GGATTTGTCGCAGGGATGATTTTAATTGTTTATCTATCGATGCTCCTGCCTATGTATCAGATGATGAATCAAATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)

Type II secretion system (T2SS), protein F (T2SSF)

(17-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

82.043

93.623

0.768