Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   JYG31_RS13305 Genome accession   NZ_CP070976
Coordinates   2584217..2584552 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus halotolerans strain MBH1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2579217..2589552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG31_RS13285 (JYG31_13285) gcvT 2579808..2580896 (-) 1089 WP_213417733.1 glycine cleavage system aminomethyltransferase GcvT -
  JYG31_RS13290 (JYG31_13290) - 2581339..2583012 (+) 1674 WP_213417734.1 SNF2-related protein -
  JYG31_RS13295 (JYG31_13295) - 2583032..2583826 (+) 795 WP_024122035.1 YqhG family protein -
  JYG31_RS13300 (JYG31_13300) sinI 2584010..2584183 (+) 174 WP_024122036.1 anti-repressor SinI family protein Regulator
  JYG31_RS13305 (JYG31_13305) sinR 2584217..2584552 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  JYG31_RS13310 (JYG31_13310) tasA 2584639..2585424 (-) 786 WP_095713270.1 biofilm matrix protein TasA -
  JYG31_RS13315 (JYG31_13315) - 2585489..2586073 (-) 585 WP_213417735.1 signal peptidase I -
  JYG31_RS13320 (JYG31_13320) tapA 2586045..2586806 (-) 762 WP_213417736.1 amyloid fiber anchoring/assembly protein TapA -
  JYG31_RS13325 (JYG31_13325) - 2587084..2587407 (+) 324 WP_024122040.1 YqzG/YhdC family protein -
  JYG31_RS13330 (JYG31_13330) - 2587450..2587629 (-) 180 WP_003236949.1 YqzE family protein -
  JYG31_RS13335 (JYG31_13335) comGG 2587701..2588075 (-) 375 WP_188323133.1 competence type IV pilus minor pilin ComGG Machinery gene
  JYG31_RS13340 (JYG31_13340) comGF 2588076..2588465 (-) 390 WP_213417737.1 competence type IV pilus minor pilin ComGF Machinery gene
  JYG31_RS13345 (JYG31_13345) comGE 2588491..2588838 (-) 348 WP_095713273.1 competence type IV pilus minor pilin ComGE Machinery gene
  JYG31_RS13350 (JYG31_13350) comGD 2588822..2589253 (-) 432 WP_103672268.1 competence type IV pilus minor pilin ComGD Machinery gene
  JYG31_RS13355 (JYG31_13355) comGC 2589243..2589539 (-) 297 WP_010334925.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=541737 JYG31_RS13305 WP_003226345.1 2584217..2584552(+) (sinR) [Bacillus halotolerans strain MBH1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=541737 JYG31_RS13305 WP_003226345.1 2584217..2584552(+) (sinR) [Bacillus halotolerans strain MBH1]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCAGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCTGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1