Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   LGV81_RS05475 Genome accession   NZ_CP086265
Coordinates   1106246..1108336 (+) Length   696 a.a.
NCBI ID   WP_011000963.1    Uniprot ID   Q8Y0N2
Organism   Ralstonia pseudosolanacearum strain RS647     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1101246..1113336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGV81_RS05455 (LGV81_05460) rsxB 1101533..1102339 (-) 807 WP_021154733.1 electron transport complex subunit RsxB -
  LGV81_RS05460 (LGV81_05465) - 1102479..1103183 (+) 705 WP_019717849.1 TetR family transcriptional regulator -
  LGV81_RS05465 (LGV81_05470) - 1103250..1104518 (-) 1269 WP_011000960.1 polyhydroxyalkanoate depolymerase -
  LGV81_RS05470 (LGV81_05475) - 1104733..1105929 (-) 1197 WP_011000962.1 amino acid aminotransferase -
  LGV81_RS05475 (LGV81_05480) uvrB 1106246..1108336 (+) 2091 WP_011000963.1 excinuclease ABC subunit UvrB Machinery gene
  LGV81_RS05480 (LGV81_05485) - 1108495..1110585 (+) 2091 WP_020831546.1 site-specific recombinase -
  LGV81_RS05485 (LGV81_05490) rbsK 1110612..1111559 (-) 948 WP_020831547.1 ribokinase -
  LGV81_RS05490 (LGV81_05495) cytR 1111596..1112639 (-) 1044 WP_011000966.1 LacI family DNA-binding transcriptional regulator Regulator

Sequence

Protein


Download         Length: 696 a.a.        Molecular weight: 78663.37 Da        Isoelectric Point: 5.4230

>NTDB_id=541679 LGV81_RS05475 WP_011000963.1 1106246..1108336(+) (uvrB) [Ralstonia pseudosolanacearum strain RS647]
MTDLSQVPSPYDESKFVTFDGSPFQLYQPYPPAGDQPEAIRQLVEGIGDGLSYQTLLGVTGSGKTYTMANVIAQAGRPAI
VFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSVNEHIEQMRLSATKSLLERRDVVIVAT
VSAIYGIGNPTEYHQMILTLRTGDKISQRDVIARLIAMQYTRNETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDEV
DSLQLFDPLTGRVRQKILRFTVYPSSHYVTPRETVLRAIGTIKAELRERLDFFYQENKLVEAQRLEQRTRFDLEMLQELG
FCKGIENYSRHLSGAQPGEPPPTLVDYLPSDALMFLDESHVLIGQLNGMYNGDRARKETLSAYGFRLPSALDNRPLKFAE
FEGKMRQVVFVSATPADYEKQRAGDEVVEQVVRPTGLVDPIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKRMAEQ
LTEFLSENGVKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGR
AARNVNGTAILYGDRITESMKKAIGETERRRAKQIAHNEAHGITPRGVVKRIKDIIDGVYNVDDARAELKAAQDAAKYED
MSEKQVGKEIKRLEKQMLDHAKNLEFEKAAAVRDQLAKLKSQVFGASGEDHIVPAA

Nucleotide


Download         Length: 2091 bp        

>NTDB_id=541679 LGV81_RS05475 WP_011000963.1 1106246..1108336(+) (uvrB) [Ralstonia pseudosolanacearum strain RS647]
ATGACCGACCTCAGCCAAGTCCCCAGCCCGTACGACGAGTCGAAGTTCGTCACATTCGACGGCTCGCCGTTCCAGCTGTA
TCAGCCGTATCCGCCCGCCGGCGACCAGCCCGAGGCGATCCGCCAACTGGTCGAGGGCATCGGTGACGGCCTGTCGTACC
AGACGCTGCTGGGCGTGACGGGCTCGGGCAAGACCTACACGATGGCCAACGTGATCGCACAGGCGGGGCGGCCCGCGATC
GTGTTCGCGCCCAACAAGACGTTGGCGGCGCAACTGTATTCGGAGTTCCGCGAGTTCTTCCCGCGCAATGCGGTCGAGTA
CTTCGTCTCGTACTACGACTACTACCAGCCGGAAGCGTACGTGCCGCAGCGCGACCTGTTCATCGAGAAAGACTCGTCGG
TCAACGAGCATATCGAGCAGATGCGGCTGTCGGCCACCAAGAGCCTGCTGGAGCGCCGCGACGTGGTGATCGTGGCCACC
GTGTCGGCCATCTACGGCATCGGCAACCCGACCGAATACCACCAGATGATCCTGACGCTGCGCACTGGCGACAAGATCAG
CCAGCGCGACGTGATCGCGCGCCTGATCGCCATGCAGTACACGCGCAACGAGACGGATTTTCAGCGCGGCACCTTCCGCG
TGCGCGGCGACACCGTCGACATCTTTCCCGCCGAGCACGCCGAGATGGCGGTGCGGCTGGAGCTGTTCGACGACGAGGTC
GATTCGCTGCAGCTGTTCGATCCGCTCACCGGGCGCGTGCGGCAGAAGATCCTGCGCTTCACGGTGTACCCGTCGAGCCA
CTACGTGACGCCGCGCGAGACCGTGCTGCGCGCCATCGGGACCATCAAGGCCGAACTGCGCGAGCGGCTGGATTTCTTCT
ACCAGGAGAACAAGCTGGTCGAGGCGCAGCGCCTGGAGCAGCGCACGCGCTTCGACCTGGAGATGCTGCAGGAGCTGGGC
TTCTGCAAGGGCATCGAGAACTATTCGCGGCACCTGTCCGGCGCCCAGCCGGGCGAGCCGCCTCCGACCCTGGTCGACTA
CCTGCCGTCCGACGCGCTGATGTTCCTGGACGAGTCGCACGTGCTGATCGGCCAGCTCAACGGCATGTACAACGGCGACC
GCGCGCGCAAGGAGACGCTGTCCGCGTATGGCTTCCGCCTGCCGTCCGCGCTGGACAACCGGCCGCTGAAGTTTGCCGAG
TTCGAGGGCAAGATGCGGCAGGTGGTTTTCGTGTCCGCCACGCCGGCCGATTACGAGAAGCAGCGCGCCGGCGACGAGGT
GGTCGAGCAGGTGGTGCGGCCCACGGGCCTGGTCGATCCGATCATCCACGTGCGGCCGGCCACCACGCAGGTGGACGACC
TGCTGTCGGAGATCCACGAGCGCGTCAAGGCCGGCGAGCGCGTGCTGGTCACCACACTCACCAAGCGCATGGCCGAGCAG
CTGACCGAGTTCCTGTCGGAAAACGGCGTCAAGGTCCGCTACCTGCACTCGGACATCGACACGGTCGAGCGCGTGGAGAT
CATCCGCGACCTGCGGCTGGGCACCTTCGACGTGCTGGTCGGCATCAACCTGCTGCGCGAGGGGCTGGACATTCCCGAGG
TGTCGCTGGTGGCCATCCTCGACGCCGACAAGGAAGGCTTCCTGCGCGCCGAGCGCTCGCTGATCCAGACCATCGGCCGC
GCCGCGCGCAACGTCAACGGTACCGCCATCCTCTATGGGGATCGCATCACCGAGTCGATGAAGAAGGCCATTGGCGAGAC
CGAGCGGCGCCGCGCCAAGCAGATCGCCCACAACGAGGCCCATGGCATCACGCCGCGCGGCGTGGTCAAGCGCATCAAGG
ACATCATTGATGGCGTGTACAACGTCGACGATGCGCGCGCGGAGCTGAAGGCCGCGCAGGATGCCGCCAAGTACGAAGAC
ATGAGCGAGAAGCAGGTCGGCAAGGAAATCAAGCGTCTCGAAAAGCAGATGCTCGACCACGCCAAGAACCTGGAATTCGA
GAAGGCGGCCGCGGTGCGTGACCAGTTGGCCAAGCTCAAGTCGCAGGTCTTCGGGGCCAGCGGCGAAGACCATATCGTGC
CGGCGGCCTGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(36-157)

Ultra-violet resistance protein B (UvrB)

(571-613)

Helicase conserved C-terminal domain (Helicase_C)

(454-563)

UvrB/uvrC motif (UVR)

(648-682)

UvrB interaction domain (UvrB_inter)

(178-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y0N2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.798

95.115

0.54
  uvrB Streptococcus pneumoniae R6

56.647

95.115

0.539
  uvrB Streptococcus pneumoniae D39

56.647

95.115

0.539