Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JRJ22_RS28935 Genome accession   NZ_CP070969
Coordinates   6257597..6258097 (-) Length   166 a.a.
NCBI ID   WP_054942635.1    Uniprot ID   -
Organism   Paenibacillus tianjinensis strain TB2019     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6252597..6263097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRJ22_RS28920 (JRJ22_28915) - 6254372..6256330 (-) 1959 WP_206102600.1 endonuclease MutS2 -
  JRJ22_RS28925 (JRJ22_28920) - 6256767..6257141 (-) 375 WP_206102601.1 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein -
  JRJ22_RS28930 (JRJ22_28925) rpsR 6257303..6257575 (-) 273 WP_019914552.1 30S ribosomal protein S18 -
  JRJ22_RS28935 (JRJ22_28930) ssbA 6257597..6258097 (-) 501 WP_054942635.1 single-stranded DNA-binding protein Machinery gene
  JRJ22_RS28940 (JRJ22_28935) rpsF 6258145..6258429 (-) 285 WP_054942636.1 30S ribosomal protein S6 -
  JRJ22_RS28945 (JRJ22_28940) - 6258647..6258844 (+) 198 WP_054942637.1 YjzC family protein -
  JRJ22_RS28955 (JRJ22_28950) - 6259358..6259570 (-) 213 WP_054942638.1 DUF951 domain-containing protein -
  JRJ22_RS28960 (JRJ22_28955) - 6259570..6260550 (-) 981 WP_206102602.1 mechanosensitive ion channel family protein -
  JRJ22_RS28965 (JRJ22_28960) - 6260562..6260819 (-) 258 WP_206102603.1 DUF3343 domain-containing protein -
  JRJ22_RS28970 (JRJ22_28965) yyaC 6261013..6261621 (+) 609 WP_206102604.1 spore protease YyaC -
  JRJ22_RS28975 (JRJ22_28970) - 6261593..6262093 (-) 501 WP_206102605.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18293.06 Da        Isoelectric Point: 4.8280

>NTDB_id=541651 JRJ22_RS28935 WP_054942635.1 6257597..6258097(-) (ssbA) [Paenibacillus tianjinensis strain TB2019]
MLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESSQNREGGNAPSGGNVPEEPSYGGGGNSGRGNNNNFSRSNNNQDPFSGDGKPIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=541651 JRJ22_RS28935 WP_054942635.1 6257597..6258097(-) (ssbA) [Paenibacillus tianjinensis strain TB2019]
TTGTTGAACCGTATCATTCTGATCGGTCGGTTGACCCGTGACCCGGAACTTCGTTATACTCCCGCTGGTGTTGCCGTAAC
GCAGTTTACGCTTGCCGTAGACCGCAACTTTACGGGCCAGAACGGTGAACGCGAAGCGGACTTCATCCCGGTAGTAACCT
GGAGACAGCTGGCTGAGACCTGTGCCAATTATTTGCGCAAAGGGCGTCTGGCAGCCGTAGAAGGCCGCATCCAAGTTCGG
AATTACGAGAATAACGAAGGTAAACGTGTATACGTTACTGAAGTTATTGCCGATAATGTCCGTTTCCTGGAATCCTCGCA
GAATCGTGAAGGTGGCAATGCGCCAAGTGGCGGAAATGTACCCGAAGAACCATCCTATGGTGGCGGCGGTAACAGTGGAC
GCGGAAATAACAACAATTTTTCGCGCAGCAACAATAATCAAGATCCTTTTTCGGGCGATGGAAAACCGATCGATATATCG
GACGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.682

100

0.59
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.518
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.367