Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JX000_RS03775 Genome accession   NZ_CP070964
Coordinates   772709..773086 (+) Length   125 a.a.
NCBI ID   WP_107532713.1    Uniprot ID   -
Organism   Staphylococcus sp. SB1-57     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 767709..778086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JX000_RS03745 (JX000_03745) atpD 767952..769364 (+) 1413 WP_002451653.1 F0F1 ATP synthase subunit beta -
  JX000_RS03750 (JX000_03750) - 769384..769788 (+) 405 WP_002451652.1 F0F1 ATP synthase subunit epsilon -
  JX000_RS03755 (JX000_03755) - 769940..770173 (+) 234 WP_002451651.1 DUF1146 family protein -
  JX000_RS03760 (JX000_03760) murA 770285..771550 (+) 1266 WP_002466773.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  JX000_RS03765 (JX000_03765) fabZ 771594..772034 (+) 441 WP_002451649.1 3-hydroxyacyl-ACP dehydratase FabZ -
  JX000_RS03770 (JX000_03770) - 772081..772521 (-) 441 WP_002451648.1 YwpF-like family protein -
  JX000_RS03775 (JX000_03775) ssb 772709..773086 (+) 378 WP_107532713.1 single-stranded DNA-binding protein Machinery gene
  JX000_RS03780 (JX000_03780) - 773502..774233 (+) 732 WP_206140898.1 transglycosylase family protein -
  JX000_RS03785 (JX000_03785) tenA 774574..775263 (+) 690 WP_002451645.1 thiaminase II -
  JX000_RS03790 (JX000_03790) thiD 775256..776077 (+) 822 WP_002451644.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  JX000_RS03795 (JX000_03795) thiM 776070..776861 (+) 792 WP_002451643.1 hydroxyethylthiazole kinase -
  JX000_RS03800 (JX000_03800) thiE 776862..777503 (+) 642 WP_206140899.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14352.21 Da        Isoelectric Point: 6.9043

>NTDB_id=541594 JX000_RS03775 WP_107532713.1 772709..773086(+) (ssb) [Staphylococcus sp. SB1-57]
MLNKIVLVGRLTKDAQIYEKEEGSKVATFCVATERNYKDQNNEIACDYLYCKAFGKTATNIEKFTSQGSLVGITGQMRSR
KYEKDNQTHFVTEVYVETIKFMSSKTKESNILSNEYNEAQNECFI

Nucleotide


Download         Length: 378 bp        

>NTDB_id=541594 JX000_RS03775 WP_107532713.1 772709..773086(+) (ssb) [Staphylococcus sp. SB1-57]
ATGTTAAATAAAATAGTTTTAGTTGGTAGACTTACAAAGGATGCCCAAATTTATGAAAAGGAGGAAGGTAGTAAAGTAGC
AACATTTTGCGTTGCTACGGAAAGAAATTATAAAGATCAGAATAATGAAATCGCATGCGATTATCTATATTGCAAAGCCT
TTGGGAAAACAGCTACGAATATTGAAAAGTTTACATCTCAAGGATCTTTAGTAGGTATTACTGGCCAAATGCGATCACGT
AAGTATGAAAAAGATAATCAGACACATTTTGTAACTGAAGTTTATGTAGAAACAATTAAATTTATGTCCTCTAAGACAAA
AGAATCCAATATCCTCTCTAATGAATATAATGAAGCACAAAATGAATGCTTCATATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

77.193

91.2

0.704
  ssb Staphylococcus aureus MW2

76.316

91.2

0.696
  ssb Latilactobacillus sakei subsp. sakei 23K

35.075

100

0.376