Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   JWH23_RS31375 Genome accession   NZ_CP070896
Coordinates   1740169..1740255 (-) Length   28 a.a.
NCBI ID   WP_349773192.1    Uniprot ID   -
Organism   Lacrimispora xylanisolvens strain ASCUSBR21     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1735169..1745255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWH23_RS09670 - 1735433..1735660 (+) 228 WP_277408937.1 DUF6774 domain-containing protein -
  JWH23_RS31360 holA 1735717..1736202 (-) 486 WP_349773004.1 DNA polymerase III subunit delta -
  JWH23_RS31365 - 1736204..1736473 (-) 270 WP_349773005.1 hypothetical protein -
  JWH23_RS31370 - 1736470..1736700 (-) 231 WP_349773006.1 hypothetical protein -
  JWH23_RS09680 - 1736697..1737200 (-) 504 WP_277408938.1 hypothetical protein -
  JWH23_RS09685 - 1737250..1737921 (-) 672 WP_277408939.1 MBL fold metallo-hydrolase -
  JWH23_RS09690 - 1737812..1738663 (-) 852 WP_277408940.1 ComEC/Rec2 family competence protein -
  JWH23_RS09695 - 1738608..1739102 (-) 495 WP_277408941.1 ComEC/Rec2 family competence protein -
  JWH23_RS09700 - 1739165..1740151 (-) 987 WP_104436732.1 GerMN domain-containing protein -
  JWH23_RS31375 pilL-C 1740169..1740255 (-) 87 WP_349773192.1 hypothetical protein Machinery gene
  JWH23_RS09705 - 1740365..1741462 (-) 1098 Protein_2028 HAMP domain-containing sensor histidine kinase -
  JWH23_RS09710 - 1741641..1742507 (-) 867 WP_277408942.1 DegV family protein -
  JWH23_RS09715 - 1742532..1744302 (-) 1771 Protein_2030 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 28 a.a.        Molecular weight: 3106.59 Da        Isoelectric Point: 8.7434

>NTDB_id=541288 JWH23_RS31375 WP_349773192.1 1740169..1740255(-) (pilL-C) [Lacrimispora xylanisolvens strain ASCUSBR21]
MHQGAIKLQSKEGEGTTFTVRIPLTYIS

Nucleotide


Download         Length: 87 bp        

>NTDB_id=541288 JWH23_RS31375 WP_349773192.1 1740169..1740255(-) (pilL-C) [Lacrimispora xylanisolvens strain ASCUSBR21]
ATGCATCAGGGAGCGATCAAGCTTCAGAGCAAAGAGGGAGAGGGTACTACATTTACTGTACGTATTCCTCTTACATACAT
TTCTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

60.87

82.143

0.5
  vicK Streptococcus mutans UA159

54.545

78.571

0.429
  chpA Acinetobacter baumannii strain A118

50

78.571

0.393