Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   JW980_RS13975 Genome accession   NZ_CP070866
Coordinates   2810952..2811350 (-) Length   132 a.a.
NCBI ID   WP_205667125.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain XY27     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2805952..2816350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW980_RS13945 (JW980_13945) - 2806025..2806294 (-) 270 WP_058868961.1 HPr family phosphocarrier protein -
  JW980_RS13950 (JW980_13950) rapZ 2806291..2807142 (-) 852 WP_004692298.1 RNase adapter RapZ -
  JW980_RS13955 (JW980_13955) panC 2807169..2808011 (-) 843 WP_004979164.1 pantoate--beta-alanine ligase -
  JW980_RS13960 (JW980_13960) panB 2808015..2808824 (-) 810 WP_205667122.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  JW980_RS13965 (JW980_13965) folK 2808861..2809349 (-) 489 WP_205667123.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  JW980_RS13970 (JW980_13970) pcnB 2809346..2810815 (-) 1470 WP_183174940.1 polynucleotide adenylyltransferase PcnB -
  JW980_RS13975 (JW980_13975) comEA 2810952..2811350 (-) 399 WP_205667125.1 ComEA family DNA-binding protein Machinery gene
  JW980_RS13980 (JW980_13980) mazG 2811369..2812130 (-) 762 WP_205667126.1 nucleoside triphosphate pyrophosphohydrolase -
  JW980_RS13985 (JW980_13985) - 2812249..2813016 (+) 768 Protein_2741 SDR family oxidoreductase -
  JW980_RS13990 (JW980_13990) - 2813056..2815362 (-) 2307 WP_125274087.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14656.05 Da        Isoelectric Point: 10.6541

>NTDB_id=541158 JW980_RS13975 WP_205667125.1 2810952..2811350(-) (comEA) [Acinetobacter johnsonii strain XY27]
MIKIKVSLLIIALLLLSLLAWVPSSYAQSFDQNYLNWKAEQQAWDDRIQAPKSVKRAVSPVQAQPVSSTNKISLNQASVD
QLQQLQGVGLKKAQAIVAYRQKQGPFETIDELQQVRGIGPAIFAKNKTRLGL

Nucleotide


Download         Length: 399 bp        

>NTDB_id=541158 JW980_RS13975 WP_205667125.1 2810952..2811350(-) (comEA) [Acinetobacter johnsonii strain XY27]
TTGATAAAAATAAAAGTAAGTTTGTTGATCATTGCGTTGTTATTACTGAGTTTACTGGCTTGGGTACCCAGTAGTTATGC
ACAGTCTTTTGATCAGAACTACCTGAACTGGAAAGCAGAGCAGCAGGCGTGGGATGATCGTATTCAAGCTCCTAAAAGCG
TGAAACGTGCTGTGTCTCCTGTTCAGGCTCAACCTGTGTCGAGCACAAATAAAATTAGTTTAAATCAAGCCAGTGTTGAT
CAATTACAGCAACTTCAGGGTGTGGGTCTAAAAAAGGCACAGGCAATCGTGGCCTATCGCCAGAAACAAGGGCCATTTGA
GACTATAGATGAGTTACAACAGGTGCGCGGGATTGGACCGGCAATTTTTGCAAAAAATAAAACCCGTTTGGGCTTGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(68-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

54.098

92.424

0.5
  comEA Acinetobacter baumannii D1279779

51.613

93.939

0.485
  comEA Acinetobacter baylyi ADP1

44.86

81.061

0.364