Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   I6J48_RS07850 Genome accession   NZ_CP070518
Coordinates   1672375..1673793 (+) Length   472 a.a.
NCBI ID   WP_205470003.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain FDAARGOS_1218     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1667375..1678793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J48_RS07830 (I6J48_07830) thrC 1667629..1668768 (+) 1140 WP_003654438.1 threonine synthase -
  I6J48_RS07835 (I6J48_07835) pbpG 1668877..1669923 (-) 1047 WP_003654437.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  I6J48_RS07840 (I6J48_07840) - 1670136..1670771 (+) 636 WP_003654436.1 response regulator -
  I6J48_RS07845 (I6J48_07845) pilS 1670782..1672350 (+) 1569 WP_205470002.1 PAS domain-containing sensor histidine kinase Regulator
  I6J48_RS07850 (I6J48_07850) pilR 1672375..1673793 (+) 1419 WP_205470003.1 sigma-54 dependent transcriptional regulator Regulator
  I6J48_RS07855 (I6J48_07855) - 1673798..1674982 (-) 1185 WP_017387760.1 S41 family peptidase -
  I6J48_RS07860 (I6J48_07860) gpmI 1674998..1676545 (-) 1548 WP_205470004.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  I6J48_RS07865 (I6J48_07865) lptG 1676672..1677742 (-) 1071 WP_017391149.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 52962.21 Da        Isoelectric Point: 6.2779

>NTDB_id=540481 I6J48_RS07850 WP_205470003.1 1672375..1673793(+) (pilR) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQTYSHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRIAIKKIARS
QAPVFVTGESGTGKEVVANLMHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGAIQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDIMLPPLRERGGDILL
LANHFIQKVCMEWEIPSKQLTTTAETYLLQQDFPGNVRELRNMIERAITLSDDECIDLTHLAPPLRGSSVNSQIATKPVN
DTSTAITQTRPKLPMEGLERYLENIEKDILLNALDMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTELGEEV

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=540481 I6J48_RS07850 WP_205470003.1 1672375..1673793(+) (pilR) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
ATGGCAGAACAGCAACCACTAGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACTCTTGCGCG
AATGGGAATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTTACTCAGTTTCATTACGATGCATGCT
TAACCGATTTAAACCTACCCGACGGTAGCGGTTTAGAGTTAGTTAAACATGTTTCTCAAACTTATTCTCACACACCAATT
GCAGTTCTAACTGCGTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCGGGAGCTTTTGATTTTGTAAGTAAACC
TATTAACCAAATTCATTTAGATCAGTTATTAAAAAAAGCGCTAAATCAGCCAAAACCAGAGCATGAGTTTGGTGAAACAA
CGTTGGAGAATGACCTATTAATCGGACGTTCTCCACCGATACAAAACTTGCGTATTGCTATAAAAAAAATAGCTCGTTCC
CAAGCTCCTGTGTTTGTTACGGGGGAATCCGGTACAGGTAAAGAAGTTGTTGCTAATCTTATGCACCGCTTGAGTAACCG
CAGCGAAGGTCCATTTATTGCGATTAACTGTGGAGCAATTCCAACTGAGCTCATGGAAAGTGAACTTTTTGGACATAAAA
AAGGTAGCTTTACTGGTGCTATCCAAGACAAACAAGGCCTTATTTTATCCGCTCATGGCGGCAGCTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAAGTCAAATTACTTCGGGCAGTACAAGAGAAAAAAATTCGCCCAGTAGGTTCCGA
TCAGGAAATCGATGTTGATTTTCGGGTGATTAGCGCCAGCCACCAAGATTTAGATTTATTAGTTCGACAAGGTAAATTCC
GTCAGGATTTATTTTTCCGTATTCATGTTATGGATATCATGTTGCCGCCACTGCGTGAGCGCGGTGGAGATATTTTGTTA
TTAGCCAATCATTTTATTCAAAAGGTTTGTATGGAATGGGAAATTCCAAGCAAACAATTAACCACTACTGCTGAAACTTA
TTTATTGCAGCAAGATTTTCCAGGTAATGTTCGTGAATTAAGAAATATGATTGAACGAGCTATTACCTTAAGTGATGATG
AATGTATTGATTTAACACATTTAGCACCTCCTCTCAGAGGCAGTAGCGTTAACTCGCAAATCGCAACTAAACCAGTGAAT
GACACATCAACTGCGATTACTCAGACTCGGCCAAAATTACCAATGGAAGGCTTAGAACGCTACTTAGAAAATATTGAAAA
AGATATTCTACTGAACGCGTTGGACATGACCCATTGGAATCGGACCTTAGCAGCTAAAAAGCTAGGAATGACCTTCCGCT
CTTTACGCTATCGATTGAAAAAGTTTGGCTTAGATACCGAATTAGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

86.681

100

0.869
  pilR Pseudomonas aeruginosa PAK

50.655

97.034

0.492