Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   I6J48_RS07845 Genome accession   NZ_CP070518
Coordinates   1670782..1672350 (+) Length   522 a.a.
NCBI ID   WP_205470002.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain FDAARGOS_1218     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1665782..1677350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J48_RS07825 (I6J48_07825) - 1666273..1667574 (+) 1302 WP_004640662.1 homoserine dehydrogenase -
  I6J48_RS07830 (I6J48_07830) thrC 1667629..1668768 (+) 1140 WP_003654438.1 threonine synthase -
  I6J48_RS07835 (I6J48_07835) pbpG 1668877..1669923 (-) 1047 WP_003654437.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  I6J48_RS07840 (I6J48_07840) - 1670136..1670771 (+) 636 WP_003654436.1 response regulator -
  I6J48_RS07845 (I6J48_07845) pilS 1670782..1672350 (+) 1569 WP_205470002.1 PAS domain-containing sensor histidine kinase Regulator
  I6J48_RS07850 (I6J48_07850) pilR 1672375..1673793 (+) 1419 WP_205470003.1 sigma-54 dependent transcriptional regulator Regulator
  I6J48_RS07855 (I6J48_07855) - 1673798..1674982 (-) 1185 WP_017387760.1 S41 family peptidase -
  I6J48_RS07860 (I6J48_07860) gpmI 1674998..1676545 (-) 1548 WP_205470004.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59038.55 Da        Isoelectric Point: 6.1837

>NTDB_id=540480 I6J48_RS07845 WP_205470002.1 1670782..1672350(+) (pilS) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
MQFPLNSSLSNTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPALYSYTLLGYSILSLLQLLCFKFIATQATKQ
LILFFVVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHPDLFEILKFDNLQEGDRFIFESRLSAYSINIKVQHLVVPQQALTLLILQDAQHINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDLEQQNTLRRMICKQTKRIDSIVQDTLGLASSERTHPIQIELNDFIKTLLDEDLSDVK
HSIQLKISDSSLKLLFDEKQLRQVLINLVRNALRHNATDSPHVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFQMECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=540480 I6J48_RS07845 WP_205470002.1 1670782..1672350(+) (pilS) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
ATGCAATTTCCCTTAAACTCATCGTTGTCCAATACGATTTTTCGTTTGGGCACGTGGTATGGTTTATATCGTCTTATTAT
TGCGGTTAGCCTCAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAGCCCGCTTTATATTCTT
ACACACTGCTTGGCTATTCCATATTAAGCCTTCTTCAGCTTTTGTGTTTTAAGTTTATTGCAACTCAGGCAACAAAGCAG
CTTATTTTATTTTTTGTGGTTGATGTTATCTGTCTGAGTTTACTTACATTTTCTGTAGGTGAACCAAATCTACAACTCAG
TTTGCTGTATGTTATTGCTATATTCACCTCGGCAATTTTACTCAGCGCAAGAATGTCTTTACTCATTACATTACTTGCGG
TCATTGCTGTTATTTACCAACGTTTTGTCGGTAGTTTATTTGACTACAATAATCTAAATACGATTGGTAATAGTGCTTTA
TTAGCCTTCTTATTTTTTGTGGTGCATGGGATCGGACAAATTGCGGTTCAGCGCTTTAAATTACTTGAGGCGCTAACTTT
CCACCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATTCTGGAACAAATTGAAGAAGGCTATCTTGTTC
TAGATGAAAACTACGACATTGTTCTAAGTAATCCCGCTGCCTGCTCTCTGTTGGGCATTCCCCCACAATTTGCCAGTGAA
AAATATCCTTTAGCTAAATGGCACCCCGATTTATTTGAAATTCTTAAGTTTGATAACCTACAAGAAGGTGATCGATTTAT
TTTTGAGTCGCGGCTGTCGGCTTACTCTATTAACATTAAAGTGCAACATCTTGTGGTGCCACAACAAGCATTGACGCTGC
TCATTTTACAAGATGCACAACACATTAATCAGCAAGCTCAACAACTCAAACTTGCTGCTTTAGGGCAACTTTCAGCCAGT
ATCGCACATGAAATCCGTAATCCTCTTGCAGCAATTGTTCAAGCAAATGAATTACTTAAAGATAGTGATTTAGAGCAGCA
AAATACTTTACGCCGTATGATTTGCAAGCAAACAAAACGCATCGATAGTATTGTTCAAGACACCTTAGGACTTGCCAGCA
GCGAAAGAACTCATCCAATCCAGATTGAATTAAACGACTTCATAAAGACGTTATTAGACGAAGATCTATCGGATGTTAAA
CATTCTATACAGCTTAAAATCTCTGATTCATCCTTAAAATTATTATTTGACGAGAAACAGCTCAGACAAGTGCTGATTAA
CCTTGTCAGGAATGCTTTACGACATAATGCCACCGATTCACCCCATGTTCTGATCAACATTCACTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGCGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACGTATGTAGA
GCAAAAACAAGGGGCATGCTTCCAAATGGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

PAS fold (PAS)

(203-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

93.103

100

0.931