Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   I6J48_RS06100 Genome accession   NZ_CP070518
Coordinates   1304657..1305061 (-) Length   134 a.a.
NCBI ID   WP_205469872.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain FDAARGOS_1218     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1299657..1310061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J48_RS06070 (I6J48_06070) - 1299740..1300009 (-) 270 WP_013198928.1 HPr family phosphocarrier protein -
  I6J48_RS06075 (I6J48_06075) rapZ 1300006..1300857 (-) 852 WP_003655028.1 RNase adapter RapZ -
  I6J48_RS06080 (I6J48_06080) panC 1300881..1301729 (-) 849 WP_005036795.1 pantoate--beta-alanine ligase -
  I6J48_RS06085 (I6J48_06085) panB 1301733..1302542 (-) 810 WP_003655024.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  I6J48_RS06090 (I6J48_06090) folK 1302589..1303071 (-) 483 WP_003655023.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  I6J48_RS06095 (I6J48_06095) pcnB 1303068..1304531 (-) 1464 WP_003655021.1 polynucleotide adenylyltransferase PcnB -
  I6J48_RS06100 (I6J48_06100) comEA 1304657..1305061 (-) 405 WP_205469872.1 ComEA family DNA-binding protein Machinery gene
  I6J48_RS06105 (I6J48_06105) mazG 1305030..1305836 (-) 807 WP_205469873.1 nucleoside triphosphate pyrophosphohydrolase -
  I6J48_RS06110 (I6J48_06110) - 1305949..1306722 (+) 774 WP_205469874.1 SDR family oxidoreductase -
  I6J48_RS06115 (I6J48_06115) - 1306770..1309076 (-) 2307 WP_003655013.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15431.65 Da        Isoelectric Point: 10.2836

>NTDB_id=540470 I6J48_RS06100 WP_205469872.1 1304657..1305061(-) (comEA) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
MQLSMNLWKSKYYIFIVLFWSLISSTLIQAQSFDQNFKEWKAKQQMYDQKLSTQHSSHSNAPKSSTMTDSSGQVYLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLSL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=540470 I6J48_RS06100 WP_205469872.1 1304657..1305061(-) (comEA) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
ATGCAGCTCAGCATGAATCTTTGGAAGAGTAAGTATTATATTTTTATTGTTTTATTTTGGAGCCTGATTTCATCGACACT
GATTCAGGCCCAATCTTTCGATCAAAATTTTAAGGAGTGGAAAGCTAAACAGCAGATGTATGATCAGAAGTTAAGCACGC
AGCATTCCTCTCATTCTAATGCCCCAAAAAGTTCAACAATGACTGATTCTTCAGGGCAAGTTTACTTGAATCAAGCCAAT
ATTGATGAGCTTCAAAAGCTAAAAGGGATTGGTGAGAAAAAGGCTCAGGCGATTGTAGAATACCGTCAAAAGAATGGTGG
TTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGGTTGAGTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

68.613

100

0.701
  comEA Acinetobacter baumannii D1279779

67.153

100

0.687
  comEA Acinetobacter baylyi ADP1

41.935

92.537

0.388