Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   I6J48_RS03285 Genome accession   NZ_CP070518
Coordinates   688994..689701 (+) Length   235 a.a.
NCBI ID   WP_005041938.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain FDAARGOS_1218     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 683994..694701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J48_RS03270 (I6J48_03270) - 686808..687617 (+) 810 WP_205469616.1 peptidoglycan DD-metalloendopeptidase family protein -
  I6J48_RS03275 (I6J48_03275) - 687614..688039 (-) 426 WP_026057170.1 GNAT family N-acetyltransferase -
  I6J48_RS03280 (I6J48_03280) - 688132..688554 (-) 423 WP_004642007.1 OsmC family protein -
  I6J48_RS18365 - 688690..688752 (-) 63 Protein_657 hypothetical protein -
  I6J48_RS03285 (I6J48_03285) crp 688994..689701 (+) 708 WP_005041938.1 cAMP-activated global transcriptional regulator CRP Regulator
  I6J48_RS03290 (I6J48_03290) - 689861..690910 (+) 1050 WP_198496212.1 NADP(H)-dependent aldo-keto reductase -
  I6J48_RS03295 (I6J48_03295) - 690965..691744 (-) 780 WP_080026580.1 M48 family metallopeptidase -
  I6J48_RS03300 (I6J48_03300) - 691861..692178 (-) 318 WP_005041944.1 hypothetical protein -
  I6J48_RS03305 (I6J48_03305) - 692300..693619 (-) 1320 WP_003652692.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26479.08 Da        Isoelectric Point: 4.6469

>NTDB_id=540466 I6J48_RS03285 WP_005041938.1 688994..689701(+) (crp) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDVSLEDAPVSDDDYDDDE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=540466 I6J48_RS03285 WP_005041938.1 688994..689701(+) (crp) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCCCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCGAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGCGAAGATGATGAACGTGAAATTGTTGTTGCGTATTTGAATCCGGGCGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACTCGTGATGTCTGTGAAATTGCAGA
AATTTCTTATGACAACTTTCACGAACTTAGCAAACAATATCCAGACTTAAGTTATGCTGTTTTTGCACAACTCGTTCGCC
GTCTAAAAAATACGACCCGTAAAATGACAGATCTTGCATTTATTGATGTGTCTGGCCGTATTGCACGTTGTTTAATCGAC
CTATCTTCACAGCCAGAAGCAATGATTTTGCCAAATGGTCGTCAAATTCGTATTACTCGTCAAGAAATTGGTCGTATTGT
GGGTTGTTCACGTGAAATGGTTGGCCGTGTACTCAAAACTTTAGAAGATCAAGGCATGATCCAAACAGATGGTAAAGCTA
TTCTTATTTTTGATGTTTCATTAGAAGATGCACCTGTTTCTGATGACGACTATGATGATGACGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-219)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

97.021

100

0.97
  crp Vibrio cholerae strain A1552

48.223

83.83

0.404
  crp Haemophilus influenzae Rd KW20

48.705

82.128

0.4