Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   LGV82_RS12490 Genome accession   NZ_CP086104
Coordinates   2678108..2680198 (-) Length   696 a.a.
NCBI ID   WP_011000963.1    Uniprot ID   Q8Y0N2
Organism   Ralstonia pseudosolanacearum strain RS650     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2673108..2685198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGV82_RS12475 (LGV82_12455) cytR 2673803..2674846 (+) 1044 WP_011000966.1 LacI family DNA-binding transcriptional regulator Regulator
  LGV82_RS12480 (LGV82_12460) rbsK 2674883..2675830 (+) 948 WP_011000965.1 ribokinase -
  LGV82_RS12485 (LGV82_12465) - 2675857..2677949 (-) 2093 Protein_2432 site-specific recombinase -
  LGV82_RS12490 (LGV82_12470) uvrB 2678108..2680198 (-) 2091 WP_011000963.1 excinuclease ABC subunit UvrB Machinery gene
  LGV82_RS12495 (LGV82_12475) - 2680515..2681711 (+) 1197 WP_247393197.1 amino acid aminotransferase -
  LGV82_RS12500 (LGV82_12480) - 2681926..2683194 (+) 1269 WP_011000960.1 polyhydroxyalkanoate depolymerase -
  LGV82_RS12505 (LGV82_12485) - 2683261..2683965 (-) 705 WP_019717849.1 TetR family transcriptional regulator -
  LGV82_RS12510 (LGV82_12490) rsxB 2684105..2684911 (+) 807 WP_247318512.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 696 a.a.        Molecular weight: 78663.37 Da        Isoelectric Point: 5.4230

>NTDB_id=540376 LGV82_RS12490 WP_011000963.1 2678108..2680198(-) (uvrB) [Ralstonia pseudosolanacearum strain RS650]
MTDLSQVPSPYDESKFVTFDGSPFQLYQPYPPAGDQPEAIRQLVEGIGDGLSYQTLLGVTGSGKTYTMANVIAQAGRPAI
VFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSVNEHIEQMRLSATKSLLERRDVVIVAT
VSAIYGIGNPTEYHQMILTLRTGDKISQRDVIARLIAMQYTRNETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDEV
DSLQLFDPLTGRVRQKILRFTVYPSSHYVTPRETVLRAIGTIKAELRERLDFFYQENKLVEAQRLEQRTRFDLEMLQELG
FCKGIENYSRHLSGAQPGEPPPTLVDYLPSDALMFLDESHVLIGQLNGMYNGDRARKETLSAYGFRLPSALDNRPLKFAE
FEGKMRQVVFVSATPADYEKQRAGDEVVEQVVRPTGLVDPIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKRMAEQ
LTEFLSENGVKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGR
AARNVNGTAILYGDRITESMKKAIGETERRRAKQIAHNEAHGITPRGVVKRIKDIIDGVYNVDDARAELKAAQDAAKYED
MSEKQVGKEIKRLEKQMLDHAKNLEFEKAAAVRDQLAKLKSQVFGASGEDHIVPAA

Nucleotide


Download         Length: 2091 bp        

>NTDB_id=540376 LGV82_RS12490 WP_011000963.1 2678108..2680198(-) (uvrB) [Ralstonia pseudosolanacearum strain RS650]
ATGACCGACCTCAGCCAAGTCCCCAGCCCGTACGACGAGTCGAAGTTCGTCACATTCGACGGCTCGCCGTTCCAGCTGTA
TCAGCCGTATCCGCCCGCCGGCGACCAGCCCGAGGCGATCCGCCAACTGGTCGAGGGCATCGGTGACGGCCTGTCGTACC
AGACGCTGCTGGGCGTGACGGGCTCGGGCAAGACCTACACGATGGCCAACGTGATCGCACAGGCGGGGCGGCCCGCGATC
GTGTTCGCGCCCAACAAGACGTTGGCGGCGCAACTGTATTCGGAGTTCCGCGAGTTCTTCCCGCGCAATGCGGTCGAGTA
CTTCGTCTCGTACTACGACTACTACCAGCCGGAAGCGTACGTGCCGCAGCGCGACCTGTTCATCGAGAAAGACTCGTCGG
TCAACGAGCATATCGAGCAGATGCGGCTGTCGGCCACCAAGAGCCTGCTGGAGCGCCGCGACGTGGTGATCGTGGCCACC
GTGTCGGCCATCTACGGCATCGGCAACCCGACCGAATACCACCAGATGATCCTGACGCTGCGCACTGGCGACAAGATCAG
CCAGCGCGACGTGATCGCGCGCCTGATCGCCATGCAGTACACGCGCAACGAGACGGATTTTCAGCGCGGCACCTTCCGCG
TGCGCGGCGACACCGTCGACATCTTTCCCGCCGAGCACGCCGAGATGGCGGTGCGGCTGGAGCTGTTCGACGACGAGGTC
GATTCGCTGCAGCTGTTCGATCCGCTTACCGGGCGCGTGCGGCAGAAGATCCTGCGCTTCACGGTGTACCCGTCGAGCCA
CTACGTGACGCCGCGCGAGACCGTGCTGCGCGCCATCGGGACCATCAAGGCCGAGCTGCGCGAGCGGCTGGATTTCTTCT
ACCAGGAGAACAAGCTGGTCGAGGCGCAGCGCCTGGAGCAGCGCACGCGCTTCGACCTGGAGATGCTGCAGGAGCTGGGC
TTCTGCAAGGGCATCGAGAACTATTCGCGGCACCTGTCCGGCGCCCAGCCGGGCGAGCCGCCCCCGACCCTGGTCGACTA
CCTGCCGTCCGACGCGCTGATGTTCCTGGACGAGTCGCACGTGCTGATCGGCCAGCTCAACGGCATGTACAACGGCGACC
GCGCGCGCAAGGAGACGCTGTCCGCGTATGGCTTCCGCCTGCCGTCCGCGCTGGACAACCGGCCGCTGAAGTTCGCCGAG
TTCGAGGGCAAGATGCGGCAGGTGGTTTTCGTGTCCGCCACGCCGGCCGATTACGAGAAGCAGCGCGCCGGCGACGAGGT
GGTCGAGCAGGTGGTGCGGCCCACGGGCCTGGTCGATCCGATCATCCACGTGCGGCCGGCCACCACGCAGGTGGACGACC
TGCTGTCGGAGATCCACGAGCGCGTCAAGGCCGGCGAGCGCGTGCTGGTCACCACGCTCACCAAGCGCATGGCCGAGCAG
CTGACCGAGTTCCTGTCGGAAAACGGCGTCAAGGTCCGCTACCTGCACTCGGACATCGACACGGTCGAGCGCGTGGAGAT
CATCCGCGACCTGCGGCTGGGCACCTTCGACGTGCTGGTCGGCATCAACCTGCTGCGCGAGGGGCTGGACATTCCCGAGG
TGTCGCTGGTGGCCATCCTCGACGCCGACAAGGAAGGCTTCCTGCGCGCCGAGCGCTCGCTGATCCAGACCATCGGCCGC
GCCGCGCGCAACGTCAACGGCACCGCCATCCTCTATGGGGATCGCATCACCGAGTCGATGAAGAAGGCCATTGGCGAGAC
CGAGCGGCGACGCGCCAAGCAGATCGCCCACAACGAGGCCCATGGCATCACGCCGCGCGGCGTGGTCAAGCGCATCAAGG
ACATCATTGACGGCGTGTACAACGTCGACGATGCGCGCGCGGAGCTGAAGGCCGCGCAGGATGCCGCCAAGTACGAAGAC
ATGAGCGAGAAGCAGGTCGGCAAGGAAATCAAGCGTCTCGAAAAGCAGATGCTTGACCACGCCAAGAACCTGGAATTCGA
GAAGGCGGCCGCGGTGCGCGACCAGTTGGCCAAGCTCAAGTCGCAGGTCTTCGGGGCCAGCGGCGAAGACCATATCGTGC
CGGCGGCCTGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(36-157)

Ultra-violet resistance protein B (UvrB)

(571-613)

Helicase conserved C-terminal domain (Helicase_C)

(454-563)

UvrB/uvrC motif (UVR)

(648-682)

UvrB interaction domain (UvrB_inter)

(178-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y0N2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.798

95.115

0.54
  uvrB Streptococcus pneumoniae R6

56.647

95.115

0.539
  uvrB Streptococcus pneumoniae D39

56.647

95.115

0.539