NTDB

Overview

Name	cclA/cilC	Type	Machinery gene
Locus tag	LL046_RS10920	Genome accession	NZ_CP086088
Coordinates	2140066..2140731 (+)	Length	221 a.a.
NCBI ID	WP_012898528.1	Uniprot ID	-
Organism	Lactococcus lactis subsp. lactis strain EIP13A
Function	processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2135066..2145731

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL046_RS10885 (LL046_10850)	-	2135219..2136202 (-)	984	WP_235585840.1	hypothetical protein	-
LL046_RS10890 (LL046_10855)	-	2136208..2136534 (-)	327	WP_017865098.1	lactococcin 972 family bacteriocin	-
LL046_RS10895 (LL046_10860)	-	2136834..2137562 (-)	729	WP_004254546.1	LytTR family transcriptional regulator DNA-binding domain-containing protein	-
LL046_RS10900 (LL046_10865)	-	2137755..2137976 (+)	222	WP_010906270.1	YqgQ family protein	-
LL046_RS10905 (LL046_10870)	-	2138010..2138981 (+)	972	WP_017865099.1	ROK family glucokinase	-
LL046_RS10910 (LL046_10875)	-	2138984..2139370 (+)	387	WP_004254540.1	rhodanese-like domain-containing protein	-
LL046_RS10915 (LL046_10880)	-	2139453..2139899 (-)	447	WP_004254538.1	DNA starvation/stationary phase protection protein	-
LL046_RS10920 (LL046_10885)	cclA/cilC	2140066..2140731 (+)	666	WP_012898528.1	A24 family peptidase	Machinery gene
LL046_RS10925 (LL046_10890)	dinB	2140682..2141776 (-)	1095	WP_017865100.1	DNA polymerase IV	-
LL046_RS10930 (LL046_10895)	-	2141855..2142346 (-)	492	WP_017865101.1	prolyl-tRNA synthetase associated domain-containing protein	-
LL046_RS10935 (LL046_10900)	-	2142425..2143918 (-)	1494	WP_015427125.1	basic amino acid/polyamine antiporter	-
LL046_RS10940 (LL046_10905)	-	2144110..2145240 (-)	1131	WP_211752535.1	aminotransferase	-

Sequence

Protein

Download Length: 221 a.a. Molecular weight: 25622.79 Da Isoelectric Point: 8.8481

                                >NTDB_id=540311 LL046_RS10920 WP_012898528.1 2140066..2140731(+) (cclA/cilC) [Lactococcus lactis subsp. lactis strain EIP13A]

MDILFIFVIGSIFGSFFGLIVDRIPLRKSIIFGRSHCDSCQQLLAYRDLIPIFSQISSGSHCRYCKSKIPYLYVFLEFSS

ALIFVLAWVNYLKPSQFLLIILSLILSAFDYRQHSFPFVIWFIFALSFILIFPLSPLFYFWLILAVLAEKFNLRVGSGDF

LWFFTASFSLTFLNEMLLLQIACSLGIIYYLITKKRAEIAFIPFLTIAYLMLLFGHQILSP

Nucleotide

Download Length: 666 bp

                                >NTDB_id=540311 LL046_RS10920 WP_012898528.1 2140066..2140731(+) (cclA/cilC) [Lactococcus lactis subsp. lactis strain EIP13A]

ATGGACATTTTATTTATATTTGTAATTGGAAGTATTTTTGGCTCCTTTTTTGGCTTAATAGTTGACCGTATTCCACTAAG

AAAATCAATTATTTTTGGACGCTCACATTGTGATTCTTGTCAGCAACTTTTAGCCTATCGTGATCTAATTCCTATTTTTT

CTCAAATAAGCTCTGGCTCACATTGCCGTTATTGTAAAAGTAAAATTCCATATTTATATGTTTTTTTGGAGTTCTCATCA

GCTTTAATTTTTGTTTTAGCTTGGGTAAATTATCTTAAACCTAGTCAATTTTTACTGATTATTCTTTCACTAATTTTATC

TGCTTTTGATTATCGTCAGCACAGTTTTCCTTTTGTTATCTGGTTTATTTTTGCACTCAGTTTTATTTTAATATTTCCTC

TTTCTCCCCTTTTCTATTTTTGGCTTATTTTAGCCGTCTTAGCTGAAAAATTCAATTTAAGAGTTGGCAGCGGTGATTTT

TTATGGTTTTTTACCGCTTCATTTTCTCTAACTTTCTTAAACGAAATGCTGCTCCTTCAAATCGCTTGTTCTCTTGGTAT

CATTTATTATCTAATCACAAAAAAACGAGCTGAAATTGCCTTCATCCCGTTTCTAACTATTGCATATCTAATGTTGCTTT

TTGGACACCAAATTCTGTCACCGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
cclA/cilC	Streptococcus mitis SK321	37.443	99.095	0.371
cclA/cilC	Streptococcus pneumoniae Rx1	37.674	97.285	0.367
cclA/cilC	Streptococcus pneumoniae D39	37.674	97.285	0.367
cclA/cilC	Streptococcus pneumoniae R6	37.674	97.285	0.367
cclA/cilC	Streptococcus pneumoniae TIGR4	37.209	97.285	0.362

Detailed information NTG0540311